Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00376 ATGAGCAACCAAAAGGGTCGTCGTCATGAAGAAGAAATGGGCACCTCAGAAACCACCGGAAAAGTGGTTGTGGTTGCAGTTAAAGCTTCCAGAGATATTTCAAGAACTGCTCTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTCTTGGTGGTTATTCCAGTTCTTTCTTCAAGCAAGAGGGTATGGGGATTTTCAAGATTCACCACTGATTGTGCCTCAAGTAATTGGAGATCCAGTTTAGGCACTGCTTCAGATCAGAAAGAAGTTATTACAAAATCCTGTTCCCAGTTAGTGCTTCAACTCCATGATTTTTACGATCCAGAGAAGATAAAGATCAGAGTGAAGATTCTTTCTGGTTCTTCATGTGGAGGTGTGGCCGCTGAGGCCAAGAGAGTTCAATCAAGCTGGGTTATATTGGACAAAAAGTTGAAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAACATTGTAATCATGAAGCGATCCAGGCCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCGAAAATGGAACTAAACACGGGTTCTCCATTGAAGCTTGGAAGAAACTTGACAGAGAACACAGAAGATGCTGAAGGTATAATTAGAGGTCCAGTTGTTACTCCTGCTAGCAGTCCTGAACAAGGGTCACCACCGCTAACTGCAACTGATGTTGGAACATCATCGATATCAAGCTCAGATCCTGCAACTTCACCATTTTTCCACTCCCACAACTACGAGAAACAAAGGAGAGGTTTCACCTTGGTTCACGAGGGACTCACCAACCTAGAGGATATTGAGTCTGACTCCGAGACTGAAAAGCTCAGCATGTCGTCCAAGAGTTCATATTTTCAGCCATGGATTGCGAATGTGATTTGCATGGATGGTGGTGACGAAGACAACATGGGAAGATCAAGCGACAAGAGTTTGGCCACTGCCTACGAGGCTTTGCTTGAGAAATTCTCGAAGTTGGATGAAGATCCTATACTGGGAATGCTCAACTGTAAGATTGATGTGAATTTGAGCAAAAGTGTTAGAGAAGCAATTTCACTGGCTAAAGGTTCAGCTCCTGGCCCTCCTCCGTTGTGCTCCATTTGTCAGCACAAGGCACCGGTTTTTGGCAATCCACCACGGTGGTTTACGTTTGCTGAATTGCAACTTGCCACGGGTGGTTTTTCACAGGCGAATTTCTTGGCCGAAGGTGGTTTTGGTTCTGTGCACCGTGGAGTGCTGCATGATGGACAAGTCATTGCTGTGAAACAGTATAAATTAGCCAGCACTCAGGGAGATAAAGAGTTTTGCTCAGAAGTAGAGGTCTTAAGCTGTGCACAACATCGCAATGTTGTGATGCTAATCGGGTTCTGCGTGGAGAATGGAAGAAGATTGCTGGTTTACGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAGACGAAAGCAGAATGTGCTGGAATGGTCTGCAAGACAAAAGATTGCAGTTGGAGCAGCTCGTGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGAGGCCCAACAATATCCTCCTCACTCATGATTTTGAAGCTTTAGTGGGAGATTTTGGGCTTGCTAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGAGTGATAGGAACATTTGGGTATTTGGCGCCAGAATACGCTCAGAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCCTTCGGGATAGTACTGCTGGAACTCGTCACAGGAAGAAAAGCAGTGGATATAAACCGTCCCAAAGGCCAACAATGTCTAAGTGAATGGGCAAGGCCATTGCTCGAAAAACAAGCGATTTATAAACTAGTTGATCCGAGTTTAAGAAACTGCTATGTTGATCAAGAGGTATATCGTATGCTGCAATGTTCCTCTTTGTGTATTGGACGGGATCCTCATTTAAGGCCTCGAATGTCACAGGTGCTGAGGATGCTGGAAGGTGACATTCTAATGTGA 2031 0.449 MSNQKGRRHEEEMGTSETTGKVVVVAVKASRDISRTALVWALTHVVQPGDCIKLLVVIPVLSSSKRVWGFSRFTTDCASSNWRSSLGTASDQKEVITKSCSQLVLQLHDFYDPEKIKIRVKILSGSSCGGVAAEAKRVQSSWVILDKKLKHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKMELNTGSPLKLGRNLTENTEDAEGIIRGPVVTPASSPEQGSPPLTATDVGTSSISSSDPATSPFFHSHNYEKQRRGFTLVHEGLTNLEDIESDSETEKLSMSSKSSYFQPWIANVICMDGGDEDNMGRSSDKSLATAYEALLEKFSKLDEDPILGMLNCKIDVNLSKSVREAISLAKGSAPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLHDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVENGRRLLVYEYICNGSLDSHLYRRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLVDPSLRNCYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRMLEGDILM 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00376 676 MobiDBLite consensus disorder prediction 218 248 - -
Viun3g00376 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 372 475 - -
Viun3g00376 676 PANTHER OS01G0750732 PROTEIN 302 674 - -
Viun3g00376 676 SUPERFAMILY Protein kinase-like (PK-like) 380 671 IPR011009 -
Viun3g00376 676 ProSiteProfiles Protein kinase domain profile. 400 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00376 676 MobiDBLite consensus disorder prediction 215 248 - -
Viun3g00376 676 Gene3D Transferase(Phosphotransferase) domain 1 476 674 - -
Viun3g00376 676 FunFam Dual-specific kinase DSK1-like 14 168 - -
Viun3g00376 676 Pfam Protein tyrosine and serine/threonine kinase 404 670 IPR001245 GO:0004672|GO:0006468
Viun3g00376 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 476 676 - -
Viun3g00376 676 ProSitePatterns Tyrosine protein kinases specific active-site signature. 521 533 IPR008266 GO:0004672|GO:0006468
Viun3g00376 676 Gene3D Phosphorylase Kinase; domain 1 372 475 - -
Viun3g00376 676 CDD STKc_IRAK 406 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00376 Viun-Chr3 2243167 2247627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00376 380 674 Trihelix Transcription Factor Family AT1G70460 51.163 5.05e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun3g00376 PK_Tyr_Ser-Thr 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00376 - - gmx:100305413 1242.25