Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00365 ATGGGGAGGAGGATACTGAACGATGCCTTGAGGAGTATGGTGAATGCAGAGAGGAGAGGGAAAGCTATGGTGGAACTCAAGCCAATTTCCACCGTTATGTCTTCATTTCTCCGAATCATGAAAAACCATGGTTATATCAAAGATTTTCAAGTCTATGATCCGCATAGAGTGGGGAGGATAACGGTTGAACTACAAGGTAGGATCAACGATTGCAAGGCCCTTACATACCGAAAAGATATCAAGGCAAGGGATGTTGAAGCCTACAGATTGCAGACTCTTCCTACGCATCAGTGGGGTTATGTTGTGATTACAACTCCTGATGGTGTTTTGGATCATGAAGAAGCCATTAAGAAGAATTGTTAG 363 0.4325 MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKNHGYIKDFQVYDPHRVGRITVELQGRINDCKALTYRKDIKARDVEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNC 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00365 120 SUPERFAMILY Ribosomal protein S8 3 119 IPR035987 GO:0003735|GO:0005840|GO:0006412
Viun3g00365 120 Gene3D - 69 120 - -
Viun3g00365 120 Gene3D - 2 68 - -
Viun3g00365 120 FunFam 40S ribosomal protein S15a 1 68 - -
Viun3g00365 120 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 119 IPR000630 GO:0003735|GO:0005840|GO:0006412
Viun3g00365 120 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Viun3g00365 120 Pfam Ribosomal protein S8 6 119 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00365 Viun-Chr3 2165030 2169146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00365 1 120 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 81.667 7.48e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00365 K02957 - gmx:100792186 229.565