Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00350 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAGGGGTCCTTGGTCTCCCCAAGAAGATGAAACCCTAAAAAACTATCTCAAGAAGCATGGCACTGGTGGCAATTGGATAACTCTCCCACAAAAAGCAGGCCTAAAGCGCTGTGGGAAGAGTTGTCGTCTGAGATGGCTCAACTATCTCAGACCTCACATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAACTTATCTGCAACCTTTATTCAACCATCGGAAGTAGGTGGTCTCTTATTGCGGCTCAGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACACTAAGTTGAAGAAAAAGTTTTTGGTAGCAAACACCAATGCCACTGTCGATACTGTTTCTCCACAGTTCACGACTTCCACTGCTCCTCACTCTCAAGTTGAAGACCGTGTCTTCGATCATGAGAACTTCATTCCATTACCTTTAGGATCTAATGTCTCAGGTTTTGGCAGCAGTTGTAGTGTACCAGTACCCAATGAAGTTTCAGTTGTTTCAAACTCAACATTGGTGAAACAGGAACACGAGACTCAATGGTTTGGCTTCCATGACGATATTGAAGGTGAAAATGAAGCACTTTTGCTTGATTTCGTGTACCAAGATCTCTTGCTTAATAATGGGTTTGTTTCTCAAGAAAAAAACAGCGAAGTTGCCCCATCATTTGGCTAA 714 0.4328 MGRAPCCDKANVKRGPWSPQEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQLICNLYSTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLVANTNATVDTVSPQFTTSTAPHSQVEDRVFDHENFIPLPLGSNVSGFGSSCSVPVPNEVSVVSNSTLVKQEHETQWFGFHDDIEGENEALLLDFVYQDLLLNNGFVSQEKNSEVAPSFG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00350 237 SMART sant 67 115 IPR001005 -
Viun3g00350 237 SMART sant 13 64 IPR001005 -
Viun3g00350 237 CDD SANT 71 113 IPR001005 -
Viun3g00350 237 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun3g00350 237 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun3g00350 237 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun3g00350 237 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun3g00350 237 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun3g00350 237 CDD SANT 16 62 IPR001005 -
Viun3g00350 237 Gene3D - 7 68 - -
Viun3g00350 237 PANTHER OS09G0431300 PROTEIN 1 148 - -
Viun3g00350 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Viun3g00350 237 Gene3D - 70 136 - -
Viun3g00350 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun3g00350 237 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00350 Viun-Chr3 2112556 2113892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00350 1 118 MYB Transcription Factor Family AT5G65790 80.508 2.39e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g00350 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00350 K09422 - gmx:778160 285.419