Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00349 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCGCTCATCCACGAATCCTCGCCGGAGATCTTTTCACAGTACACCGCCAATGCCGATTACTCTCCGTACTCTCTGCAGGAAGCGCTCAGCGCGCTTCAGCACTACGACTCAACTGATGCAGAGTCAGATTCTGATGTCCCTTCCCTGGAATCGGATGTTCCCGTTGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGCTCGGCCTGCCCCGATTTTCGCAAGGGAAGTTGCAAGAAGGGTGACGCATGCGAGTATGCGCACGGGGTTTTCGAGTGCTGGCTCCACCCAGCCCGTTACCGTACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCACACGCCCGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGTTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGGCGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGGTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCTCCGATGACTCGTTCCGGGTCTCTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCGTTGCCTTCTTCCTGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCCATGATCCGGCCCGGGTTCTTCAGTCTTCCCTCGACCCCAACCCAGGCTCCGGTTCGCGGTGGGGTGAATTACTTTGATCTCTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGGAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAATGTTCTTGACGGGTCGGGTTCGGGTGAGCCGGCGGTTCCGGATGTTGAGTGGGTGTCGGAGCTTGTGAGTCGCTGA 1080 0.5889 MMLGETHRANPTVHVPPWPLIHESSPEIFSQYTANADYSPYSLQEALSALQHYDSTDAESDSDVPSLESDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSKAAAPFVSSPGSVSPPVESPPMSPMTRSGSLSVNEMVASLRNLQLGKIKSLPSSWNVIGSPGFGSPRGPMIRPGFFSLPSTPTQAPVRGGVNYFDLWDQSCEEEPVMERVESGRNIRARMFEKLSKENVLDGSGSGEPAVPDVEWVSELVSR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00349 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Viun3g00349 359 Gene3D - 121 184 - -
Viun3g00349 359 PANTHER UNKEMPT FAMILY MEMBER 43 357 IPR045234 -
Viun3g00349 359 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Viun3g00349 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 145 IPR000571 GO:0046872
Viun3g00349 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Viun3g00349 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Viun3g00349 359 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00349 Viun-Chr3 2104383 2105919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00349 70 257 C2H2 Transcription Factor Family AT5G12850 50.971 3.77e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g00349 zf-CCCH 8e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00349 3 2104383 2105919 Viun3g00349 3 2104383 2105919 ECH