Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00343 ATGAATAAGATGAGCAAGTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCAGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGCCTTCCGGCGGGAGTGAAGTTTGATCCAACCGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTTGAAGCAAAGAACATCAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGCATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACAAGACCAGTGATGGTGAATGGGAAACAAAAGGGTTGCAAGAAGATTCTGGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACCAGTACCATCTGGGACAGCACGAAGAAGAAAAAGAGGGAGAGCTTGTGGTGTCCAAGATTTTCTACCAGACACAACCGAGGCAGTGCAATTGGTCAGATAGAAGTGCCACAACCGGTGAAGGAAGTGGAGAACAACAAGCCAACACTAATGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCTTCGAAGGAAGTTCTCACTCACAGAGATGAAATGTCTGCTATCGTTGGAGTCCCTCAAATAACAACCTTCAACACTGCCTTGGACATTCAACAACTCAAATCCGACCAATTTAGCTTCATTCCATTCAGAAAAACCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACGGGAAGAGAAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGGCATCATCATCATCATCAACAACAACAGCAGCAAAATCAGCATGCGCAGCAACAAATTTCAAGCACAGCATTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGACGACAACTCCTACCATGTCTCCAGAATTATGCTTCAAAATGAAAATTTCCAGCAACCGCAGCAGCAGCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGCTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGCCAGACCCTGGCAACATGCACGATCATCATGAGTAG 1341 0.4623 MNKMSKLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEQQANTNGRRDSGSGSCSSKEVLTHRDEMSAIVGVPQITTFNTALDIQQLKSDQFSFIPFRKTFDEVGIGEASTGREVQASRSCEEVHEGHHHHHQQQQQQNQHAQQQISSTAFHISRPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQPQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWPDPGNMHDHHE 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00343 446 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Viun3g00343 446 MobiDBLite consensus disorder prediction 216 248 - -
Viun3g00343 446 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Viun3g00343 446 MobiDBLite consensus disorder prediction 216 251 - -
Viun3g00343 446 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Viun3g00343 446 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 336 IPR044799 GO:0003700
Viun3g00343 446 MobiDBLite consensus disorder prediction 311 338 - -
Viun3g00343 446 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Viun3g00343 446 FunFam NAC domain-containing protein 73 56 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00343 Viun-Chr3 2034088 2038691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00343 14 435 NAC Transcription Factor Family AT5G56620 53.201 8.80e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g00343 NAM 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00343 - - gmx:100794811 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00343 3 2034088 2038691 Viun3g00343 3 2034088 2038691 ECH