Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00340 ATGAAGACCCTATTAGTGTACCACCCTCTCCTCCCCCTTCAATGTAGCAACTTTATTTCGACAACCTCAAAAGCCTTTCATCAAACAATCATCCTGTTTCTTCAGCTCCAAATGGAGAACACCTTGTTCCTCAATTTTTTCCTTCTTCTTTTCCTCCTCCTGCTCCGTTCAAATGCAGCAAAAGGGGCCATTAGTGTGGGTGTGGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGCAGTAACACCCCAGGATCCTCGGTGTCGAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATCACCGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTGTCTTCTGCTCGAATTCCCAGGACGACAATGGAATTGCGACAACAGCATCGACCGAGTCCTCTGTTGTTGCCGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTCGTCAAAGACCTCTCTTTGCTATCAGATATCACTCTTTTCCATCTCAACACCAACAGAATTTCTGGTTCAGTTCCCGAGTCTTTCAGAGACCTCACTTCCCTCCGAGAGCTGGACCTCAGCAACAACCAACTCTCGGGACCTTTTCCCACCGCCACTCTATCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACAACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGTGGGTGAAATTCCAGAGAATCTCGGAAACTCACCCGCCTCCGTCATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGGGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGTGTAGGGATCTTCACCGAGATGCAAGTGTTTGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTAAATTTGGCAAATAACAAGCTTTCAGGGGAATTACCTGATGTGGTGTGCTCCTTGAGAAGCCTACTGAATCTAACTGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGGATGCTCAAGGCTATTCAATCTGGGGTTTGATTTCTCGGATAACTGTATCCCTGGAAGGAATATGCAGAGACCACAACCAGAGTGTTCTGGGATCCCTGGGGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCACGCAAATTCATCTTACTCTTCTTCTCCCTGA 1374 0.4723 MKTLLVYHPLLPLQCSNFISTTSKAFHQTIILFLQLQMENTLFLNFFLLLFLLLLRSNAAKGAISVGVGVGGRGGIGVGIGIGNGGSGGSNTPGSSVSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCSNSQDDNGIATTASTESSVVAGIDLNHANLQGTLVKDLSLLSDITLFHLNTNRISGSVPESFRDLTSLRELDLSNNQLSGPFPTATLSMPSLVYLDLRYNNFSGQLPDELFNKKLDAIFLNNNNFVGEIPENLGNSPASVINLANNKLSGSIPFSFGFMGSRLKEILFLNNQLTGCIPQGVGIFTEMQVFDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGELPDVVCSLRSLLNLTVAHNFFSGLSQGCSRLFNLGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNHANSSYSSSP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00340 457 Gene3D Ribonuclease Inhibitor 101 276 IPR032675 -
Viun3g00340 457 ProSiteProfiles Leucine-rich repeat profile. 205 226 IPR001611 GO:0005515
Viun3g00340 457 SMART LRR_typ_2 179 202 IPR003591 -
Viun3g00340 457 SMART LRR_typ_2 227 251 IPR003591 -
Viun3g00340 457 SMART LRR_typ_2 203 226 IPR003591 -
Viun3g00340 457 SMART LRR_typ_2 370 393 IPR003591 -
Viun3g00340 457 SUPERFAMILY L domain-like 104 397 - -
Viun3g00340 457 PRINTS Leucine-rich repeat signature 206 219 - -
Viun3g00340 457 PRINTS Leucine-rich repeat signature 346 359 - -
Viun3g00340 457 Gene3D Ribonuclease Inhibitor 277 414 IPR032675 -
Viun3g00340 457 FunFam Leucine-rich repeat extensin-like protein 1 104 273 - -
Viun3g00340 457 Pfam Leucine rich repeat 185 240 IPR001611 GO:0005515
Viun3g00340 457 Pfam Leucine rich repeat N-terminal domain 101 139 IPR013210 -
Viun3g00340 457 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 93 434 - -
Viun3g00340 457 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 296 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00340 Viun-Chr3 2014433 2016375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00340 100 429 Leucine-rich Repeat extension Gene Families AT3G24480 49.107 9.98e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00340 - - gmx:100786358 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00340 3 2014433 2016375 Viun3g00340 3 2014433 2016375 ECH