Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00332 ATGTCAATTTTTCATTCCCTTTTCTATGGTTTGGTAGTAGTTATCATTCTTCTACACAGTCCCAGTTCAACACAATGCCACACCAAGGGAATTAGACCCAGGCCTGGGAATGGTTTATCTACCAATATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGGAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCCGGGCAAAGGAGGTTTTTCGTCGATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAGTGGGGTGACACTGCTCAAAGCCAGCCATTGGGAACCTATGGTTCTGCAACTTTTGCAGTGAATTCACCATTTTTCGTAGCCAAGAATATCACATTCAAAAACACTACCCCGATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCCTGGGAGCACAGGACACACTCTATGATCATCTGGGTAGGCATTACTATAAGGATTGTTATATCGAAGGCTCTGTTGATTTCATCTTTGGAAACGCTCTCTCTCTCTTTGAGGGGTGTCACGTGCATGCCATAGCACAAGTTACAGGGGCCCTAACAGCGCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCATTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCGTTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1131 0.4492 MSIFHSLFYGLVVVIILLHSPSSTQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMEWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKPGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDTAQSQPLGTYGSATFAVNSPFFVAKNITFKNTTPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00332 376 Gene3D - 78 375 IPR012334 -
Viun3g00332 376 FunFam Pectinesterase 77 374 - -
Viun3g00332 376 Pfam Pectinesterase 86 368 IPR000070 GO:0030599|GO:0042545
Viun3g00332 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
Viun3g00332 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Viun3g00332 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00332 Viun-Chr3 1952896 1956019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00332 86 375 Carbohydrate Esterase AT1G05310 48.658 4.97e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00332 K01051 - gmx:100802832 713.761