Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00331 ATGTCAATTTTTCATTCCCTTTTCTATGGTTTGGTAGTAGTTATCATTCTTCTACACAGTCCCAGTTCAACACAATGCCACACCAAGGGAATTAGACCCAGGCCTGGGAATGGTTTATCTACCAATATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGGAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCCGGGCAAAGGAGGTTTTTCGTCGATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAGTGGGGTGACACTGCTCAAAGCCAGCCATTGGGAACCTATGGTTCTGCAACTTTTGCAGTGAATTCACCATTTTTCGTAGCCAAGAATATCACATTCAAAAACACTACCCCGATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCCTGGGAGCACAGGACACACTCTATGATCATCTGGGTAGGCATTACTATAAGGATTGTTATATCGAAGGCTCTGTTGATTTCATCTTTGGAAACGCTCTCTCTCTCTTTGAGCAGGGGTGTCACGTGCATGCCATAGCACAAGTTACAGGGGCCCTAACAGCGCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCATTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCGTTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1134 0.4497 MSIFHSLFYGLVVVIILLHSPSSTQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMEWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKPGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDTAQSQPLGTYGSATFAVNSPFFVAKNITFKNTTPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEQGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00331 377 SUPERFAMILY Pectin lyase-like 77 375 IPR011050 -
Viun3g00331 377 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Viun3g00331 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 374 - -
Viun3g00331 377 Pfam Pectinesterase 86 369 IPR000070 GO:0030599|GO:0042545
Viun3g00331 377 FunFam Pectinesterase 77 375 - -
Viun3g00331 377 Gene3D - 78 376 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00331 Viun-Chr3 1952896 1956026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00331 86 376 Carbohydrate Esterase AT1G05310 48.829 1.08e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00331 K01051 - gmx:100802832 709.138