Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00322 ATGGAGGAGGACGACCCACTCGAACGACTCGACTCGGAGTTCGCGTCCACCAGCTCCGGCTCCGTCATTTCCTCCACACTCAGCACCGAGGATTTCCGGAACCTCAACAGCTCCGGCGACATTTCCTCTATCAGTAGTGGCTCCGGCGAGATTCCTCCTGCCGCGGTCACCGAGGCGATACTCTCGCCGCCTCCGCTGCACCGCGCGGGACTCAGTGACTGCGAGGCGCCTGCGGTGAGGGAGAAGTGCATCGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCGGTGATTGGGAGAAGGAAAGAGATGGAGGACGCCGTGGCAGTTATTCCTGGATTCATGTCTCGTACGTGCGATCACGTCGGCGGTTGTACCGCTCCCGGCTCCAGATCCTCCGGCGAGATCTCTCCCGTTCATTTCTTCGGCGTTTACGACGGCCATGGTGGCTCACAGGTGGCTAAGTTCTGTGCTAAGCGGATGCACGATGTTATAGCAGAGGAGTGGAACCGAGAAATGGCAGGTGGGGCTGAGTGGCAGAGAAGATGGGAAACCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGCAGTTGCACCTGAAATGGTTGGATCTACTGCCTCTGTGGTGGTTCTATCTGGTTGCCAAATTATTGCATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACAATCCCCTTGTCAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGAAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTGCTTGCCATGTCCAGGGCCATAGGTGATCGGTATTTGAGACCATGGATTATTCCTGTGCCTGAGATAACTTTCACAGCTAGAACAGACGAGGATGAGTGCTTAATTTTGGCAAGTGACGGACTCTGGGATGTAATGAGTAATGAAGAGGTTGGAGAAGTGGCACGCCACATTCTTAGAAGACGCCGCAGATCCTTGTCAGTGGAGGAACCGTCTCCTGCACAAGTTGTTGCCGACAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCGATCATAGTTGTTGATCTGAAATCCAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA 1176 0.5179 MEEDDPLERLDSEFASTSSGSVISSTLSTEDFRNLNSSGDISSISSGSGEIPPAAVTEAILSPPPLHRAGLSDCEAPAVREKCIGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHVGGCTAPGSRSSGEISPVHFFGVYDGHGGSQVAKFCAKRMHDVIAEEWNREMAGGAEWQRRWETVFANSFERTDNEILSDAVAPEMVGSTASVVVLSGCQIIASNCGDSRVVLCRRTQTIPLSVDQKPDRQDELLRIEGEGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMSNEEVGEVARHILRRRRRSLSVEEPSPAQVVADSLTEIAYGRNSKDNISIIVVDLKSKRKRQQRPPLIS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00322 391 PANTHER PROTEIN PHOSPHATASE 77 377 IPR015655 GO:0004722|GO:0006470
Viun3g00322 391 FunFam Protein phosphatase 2C 51 85 385 - -
Viun3g00322 391 Pfam Protein phosphatase 2C 100 370 IPR001932 -
Viun3g00322 391 CDD PP2Cc 94 377 IPR001932 -
Viun3g00322 391 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Viun3g00322 391 Gene3D - 82 387 IPR036457 -
Viun3g00322 391 ProSiteProfiles PPM-type phosphatase domain profile. 92 377 IPR001932 -
Viun3g00322 391 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g00322 391 SUPERFAMILY PP2C-like 83 378 IPR036457 -
Viun3g00322 391 SMART PP2C_4 82 375 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00322 Viun-Chr3 1876185 1884626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00322 93 387 PP2C-type Phosphatase Gene Family AT4G26080 51.111 1.62e-100 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00322 K14497 - gmx:100793293 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00322 3 1876185 1884626 Viun3g00322 3 1876185 1884626 ECH