Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00321 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGACCCTAATACGAGACAAGTCACATTTTCAAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAACTATCTATACTGTGTGGTGCAGAAATTGCAATTGTCGTCTTCTCTATTGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTTGATGCTGTCGCAGCAAAATTTCTTCGACATGAAACCAAATCAAACGATGTCAAACAAAACAACGTAGAAGTTGGTGACATTAGTAGGTTGAATCAACAACTGTTAGATATTGAAGCCCAAATACTTGTGGAAGAAAAGAAGGGTTTGGAGCATGATCAGATACTAAAACAGCACCAACTGTCACAACCCTCCCAATTTAAGCAATTACAAGATTCGTATTTAGAATTGCAACGTAGGGTGAAAGATTATACTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAACAACCCGTGGTCGAAATAACGAAACAGGTGAAAAAAAGACGAAAGAATTGA 531 0.3898 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDAVAAKFLRHETKSNDVKQNNVEVGDISRLNQQLLDIEAQILVEEKKGLEHDQILKQHQLSQPSQFKQLQDSYLELQRRVKDYTDAIEVSECLILLAQQPVVEITKQVKKRRKN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00321 176 PANTHER MADS BOX PROTEIN 3 140 - -
Viun3g00321 176 Coils Coil 89 109 - -
Viun3g00321 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g00321 176 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g00321 176 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Viun3g00321 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Viun3g00321 176 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Viun3g00321 176 Coils Coil 128 148 - -
Viun3g00321 176 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Viun3g00321 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g00321 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g00321 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00321 Viun-Chr3 1871910 1875422 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00321 1 161 Type I MADS-box Gene Family AT2G34440 37.791 3.96e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun3g00321 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00321 - - gmx:100791127 264.618