Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00320 ATGGATAACAGCAACGTTAACCATGAGATTTCAGAGAACAGAGACCATATTGCGGTGATGCTGCTATCGCCGGCGTTAATGGTGAACAATTTCATAGACCTGGGTGGTTTTGATCTGGACGAGGCTCTTGCGGTGGTGGAGGGAGAGTCAGGGTGTGTAGTGGCAGCGTGCGAGAGCTACGTGTCGAAGTTGCCGACAGTTAACGAGGTGAAGAGGGATGAGGTTTGCGCCGTTTGCATGGAGAGGTTCAGCCGGCGCAACGAGGAAGGAGAAAAGAAGCGAGTCCCCTGCGGCCACGTGTACCACTCAAGCTGCATCACCATCTGGTTGGAGCACTGCAACTCCTGCCCCCTGTGCCGCCGCCGTATCTTATTCTAA 378 0.5423 MDNSNVNHEISENRDHIAVMLLSPALMVNNFIDLGGFDLDEALAVVEGESGCVVAACESYVSKLPTVNEVKRDEVCAVCMERFSRRNEEGEKKRVPCGHVYHSSCITIWLEHCNSCPLCRRRILF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00320 125 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Viun3g00320 125 SMART ring_2 76 119 IPR001841 -
Viun3g00320 125 Pfam Ring finger domain 76 120 IPR001841 -
Viun3g00320 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 121 - -
Viun3g00320 125 SUPERFAMILY RING/U-box 69 124 - -
Viun3g00320 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 124 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00320 Viun-Chr3 1865703 1866080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00320 22 120 C3H Transcription Factor Family AT5G01980 42.857 2.04e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00320 - K22378 gmx:102669154 152.525