Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00319 ATGGGTCGTCGAAAGATTGAGATTACGGAAGTGAAGGACCCCAACACCAAACAAGTGACATTTTCGAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTCTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATGCTGTTGCAGACAAGTTTCTGCAACAAGAAAGTGCATCAGATGTTGCTGTCACACCAAATGTTGTCGAAGGAAATGATTCATCTAATGCTGACAACATAGATGCACTGAATCAAGAATTGTGTGGTGTTCAAACTCAAATAAGCGAGGAACATAAGAAGGCTATTGAACTTGACAGGAGAAAGAAGCAACAAGATGTTACTAAGGTTACCCTCAACAAACAATTGCAACGTTCATACCTAAAGGTTCAGCGTAAGGTGGAGGACTATCTTGATGCCATTGAAGTGTCGGAGTATATGTTGCTTCTTGCAAAAGAACCTGTGATTGGAATAACAAAACAAGTAACTGCAAAAAGAAGAAAGAATTGA 555 0.4018 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDAVADKFLQQESASDVAVTPNVVEGNDSSNADNIDALNQELCGVQTQISEEHKKAIELDRRKKQQDVTKVTLNKQLQRSYLKVQRKVEDYLDAIEVSEYMLLLAKEPVIGITKQVTAKRRKN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00319 184 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun3g00319 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 Coils Coil 135 155 - -
Viun3g00319 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Viun3g00319 184 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Viun3g00319 184 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Viun3g00319 184 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Viun3g00319 184 PANTHER MADS BOX PROTEIN 3 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00319 Viun-Chr3 1861288 1861842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00319 1 167 Type I MADS-box Gene Family AT2G34440 36.994 1.15e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun3g00319 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00319 - - gmx:100790601 243.817