Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00318 ATGGGTCGTCGTAAGATTGATATCGCAGAGGTGAAGGATCCCAACGACAGACAAGTTACATTCTCAAAGCGCCGCACAGGTTTGTTCAAAAAAGCAAACGACTTGTCTGTAAAGTGCGGTGCAGAACTTGCTATTGTCATGTTCTCTCCTGCGAAAAGGCCTTACTCTTTTGGCCACCCAAGTGTTAATGTTGTTGCAGACAAATTTCTTCGGAAGAACCCAACGTCAAATTACGTACGAGAAAATGACGCACCCGATGATGAAGTTGATGACATTGAGAGGTTACGTCAACAGTTATCTGTTGTTGAAGTTCACATAAACGAGGAACAAAAGAAGGCTACGGAACTTGACGAGAGAGAGAAAGAACAAGAAACTTCAGAAGCCCAAAATAAGGAATTGCAGAATTCACCTGTGCTCCGGCGTATGGTGGAAGATTATGTTGATGCGATTGAGGTCTCAGAGTGTATGTTGCTTCTGGCGAAAGAACCTGTAATTGGAATATCAAATCGACCAATTTGCAAGAGAAGAAGAAGGAATTGA 540 0.4278 MGRRKIDIAEVKDPNDRQVTFSKRRTGLFKKANDLSVKCGAELAIVMFSPAKRPYSFGHPSVNVVADKFLRKNPTSNYVRENDAPDDEVDDIERLRQQLSVVEVHINEEQKKATELDEREKEQETSEAQNKELQNSPVLRRMVEDYVDAIEVSECMLLLAKEPVIGISNRPICKRRRRN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00318 179 Coils Coil 92 136 - -
Viun3g00318 179 PANTHER MADS BOX PROTEIN 3 127 - -
Viun3g00318 179 MobiDBLite consensus disorder prediction 110 128 - -
Viun3g00318 179 MobiDBLite consensus disorder prediction 110 133 - -
Viun3g00318 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Viun3g00318 179 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Viun3g00318 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g00318 179 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00318 Viun-Chr3 1855573 1856386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00318 1 161 Type I MADS-box Gene Family AT2G34440 36.158 2.66e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun3g00318 SRF-TF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00318 - - var:108346565 283.878