Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00317 ATGATTTCGTTGAACATAGCCAATTTAATGGGACACGGGTGCTCAAAAAACTTGGGAATTTCTAGTTGGTGTGGCGGTGGAAAGAGGAAAATATCAGAGAAAGTTGTGTTGCGTGTGAACTCAAAGGTTAGTCAACATAATAATATCCATAGCACTGGTGAAGAAGACGAGGGAGGGGAAGAGAAGAAAGTGATTGGTAGGAAGATGGAGAGCATACTTAAGTCACTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCAAGATCCACCGTCAGCGGTGGCGTTGAGGATGTCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTCACCCCATGGACTATCTCAGTTGCCAGTGGTTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGACTTCTACCTCCCACTGTCATCACTCAGTTACTTCAGGAGAAGAAACTGATGCACAACATCAGGCAATATGAGGTTCCCTTGCAGAAGTACGTGGCCATGATGGAACTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTCATTGATAATGTCGAGGAATTGCTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAGTCCTTGAGGTTTTGAAAAACTGGCCTGAGAAGAGTATTCAAGTTATTGTTGTAACTGATGGCGAGCGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGGATTCCTGTTGGTAAATTGGCTTTGTACACTGCACTAGGAGGAGTTCGTCCTTCAGCTTGTTTGCCTGTCACTATCGATGTGGGGACAAACAATGAGACATTACTGAAGGATGAATTTTACATTGGGCTTAGACAAAATAGGGCAACTGGGCAGGAATATTATGACCTTCTGGATGAGTTCATGACTGCTGTGAAGCAAAATTACGGAGAAAAAATTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTGCTTGCTAAATATGGTACAACACATCTTGTTTTCAACGACGATATACAGGGTACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACCTTACCTGAGCACAGATTCCTCTTTCTCGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTGGAGATGTCAAAGCAGACTAAGGCACCTATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCCCGGAAGAATTCACTCCAACACTTCAAGAAGCCGTGGGCTCATGAACATGAGCCAGTCAACAGTCTCCTAGACGCAGTCAAGGTTATCAAGCCTACAGTTTTGATTGGATCCTCTGGTGTGGGAAAAACATTTACAAAGGAAGTGGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACTGCCGAAGAGGCTTATCAGTGGAGTGAGGGTCGTGCAATTTTCGCTAGTGGGAGTCCATTTGATCCTGTCGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCTATTCGAGTACATGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCAACACAAGTGAGCGAGGAGAACTACAAAAATGGTTTGATTTACCCACCACTCTCTAATATCAGAAAAATCTCAGCCAATATAGCAGCAAATGTTGCTGCCAAGGCCTACGAACTAGGCTTGGCCACTCGTCTTCCTCGACCTCAGGATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTATAGGTGA 1980 0.4485 MISLNIANLMGHGCSKNLGISSWCGGGKRKISEKVVLRVNSKVSQHNNIHSTGEEDEGGEEKKVIGRKMESILKSLRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTISVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVITQLLQEKKLMHNIRQYEVPLQKYVAMMELQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKVLEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNETLLKDEFYIGLRQNRATGQEYYDLLDEFMTAVKQNYGEKILVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHRFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLDAVKVIKPTVLIGSSGVGKTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALATQVSEENYKNGLIYPPLSNIRKISANIAANVAAKAYELGLATRLPRPQDLVKYAESCMYTPVYRNYR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00317 659 FunFam Malic enzyme 373 659 - -
Viun3g00317 659 Gene3D - 373 659 - -
Viun3g00317 659 Pfam Malic enzyme, N-terminal domain 184 364 IPR012301 GO:0004471
Viun3g00317 659 Pfam Malic enzyme, NAD binding domain 375 627 IPR012302 GO:0051287
Viun3g00317 659 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 97 374 IPR046346 -
Viun3g00317 659 Gene3D - 118 372 IPR037062 GO:0004471
Viun3g00317 659 PANTHER MALIC ENZYME-RELATED 86 658 - -
Viun3g00317 659 SMART Malic_M_2 375 628 IPR012302 GO:0051287
Viun3g00317 659 PIRSF ME 87 659 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 CDD NAD_bind_1_malic_enz 375 653 - -
Viun3g00317 659 PRINTS Malic enzyme signature 346 364 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 402 418 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 250 279 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 286 308 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 505 521 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 190 214 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 PRINTS Malic enzyme signature 371 387 IPR001891 GO:0004470|GO:0004471
Viun3g00317 659 FunFam Malic enzyme 118 372 - -
Viun3g00317 659 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 658 IPR036291 -
Viun3g00317 659 ProSitePatterns Malic enzymes signature. 371 387 IPR015884 GO:0004471
Viun3g00317 659 SMART malic_2 184 365 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00317 Viun-Chr3 1848041 1853141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00317 K00029 - gmx:100782096 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00317 3 1848041 1853141 Viun10g02618 10 39752376 39757458 ECH
Viun3g00317 3 1848041 1853141 Viun5g03858 5 47025313 47030587 ECH
Viun3g00317 3 1848041 1853141 Viun9g02784 9 36517868 36522389 ECH
Viun3g00317 3 1848041 1853141 Viun3g00317 3 1848041 1853141 ECH
Viun3g00317 3 1848041 1853141 Viun4g00126 4 591576 596497 PCT