Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00310 ATGCACACACACACCCCTCCCTCCAAGTTACTTCTCCTTACATTACATCACTCAACACCCAATCAAACCTTCACCAAACATACTCATTCATTCACTCACTCACTCACACACACACACACACACAACCACTGTCCTTTCAACCACGCAATGGCTGAGCTACCTAGCTCAGAAGCATCGTCATCTGCTTTCACCCGCAAGCACTCGTCTCCGGAGGCCCATTTGCCAGGACCCAATCGCAAAAGGCCCAAGCAGGCCCGCGATAGCAGCAGCAAGCACCCCGTCTACAGAGGGGTCCGAATGCGGGCATGGGGGAAGTGGGTATCCGAAATCCGCGAGCCAAGGAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCTGAGATGGCTGCGCGTGCGCACGACGTTGCTGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAGCTCGCCGGCTCCCTGCCACGGCCCGACTCCAACTCGCCGCGGGACGTGCAAGCGGCGGCAGCGAAGGCCGCCGCCATGGAGGTAATGGATCCCCCGACGACCCCGTCGTGGACGCTGTCGCAGTCATCATCGTCGTCTTCGTTGGCGGTTAGTTCGTCCTCGGGCGAGACGTCGACGGCGGATGAACTCGGGGAGATAGTGGAACTGCCGAGTCTGCGGAGGAGTTTGGAAATACCGGAGCGGAGTGAAGAGGTGGTGTTCGTGGAGCCGGTGGACGGGTGGCTGTATTCTGAGGCGTGGTGTGACGGCATTTATGATGAGAGGGGGTGTGGGGGTTATTTTATTGGAGATGAGATTTCAATGCAGGAGTCAGAGAGCATGATTCTTTGTGGCTTTGAGGGTTCCTTGTGGCAGCATTAA 876 0.5776 MHTHTPPSKLLLLTLHHSTPNQTFTKHTHSFTHSLTHTHTHNHCPFNHAMAELPSSEASSSAFTRKHSSPEAHLPGPNRKRPKQARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNSPRDVQAAAAKAAAMEVMDPPTTPSWTLSQSSSSSSLAVSSSSGETSTADELGEIVELPSLRRSLEIPERSEEVVFVEPVDGWLYSEAWCDGIYDERGCGGYFIGDEISMQESESMILCGFEGSLWQH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00310 291 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Viun3g00310 291 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Viun3g00310 291 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Viun3g00310 291 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Viun3g00310 291 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Viun3g00310 291 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Viun3g00310 291 MobiDBLite consensus disorder prediction 72 94 - -
Viun3g00310 291 MobiDBLite consensus disorder prediction 55 94 - -
Viun3g00310 291 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Viun3g00310 291 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Viun3g00310 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 72 228 - -
Viun3g00310 291 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00310 Viun-Chr3 1783214 1784885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00310 78 257 AP2-EREBP Transcription Factor Family AT5G25810 57.459 4.94e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun3g00310 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00310 K09286 - gmx:100778201 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00310 3 1783214 1784885 Viun3g00310 3 1783214 1784885 ECH
Viun3g00310 3 1783214 1784885 Viun4g00136 4 699794 701345 PCT