Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00298 ATGGAACGCATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGTAAAACGAAGCATCCGCAACTTCTGTACGAGGCAAAGCTGTACAATATTCTTCAAGGAGGAAGTGGAATTCCCAACATAAAATGGTCTGGCATAGACGGGGAGGAAAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTTTGCATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTATACATTATTGATTTTGGGCTTGCAAAACGATACCGGGATTCCACTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGCACAGCCCGGTATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAATCTCTAGGATACGTACTACTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTTTGCAGAAATCAACCCGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTGCTCGAGAAGATTACGAATTTGATTACGTTTTTGATTGGACCATTTTAAAGTACCAGCAATCTCAAAAGAGTGCAGTGCTCCCTCCGCTATCTCCAGTCCCAGGAGCAAGTAACAGTCGAGCAATTCCAATGGATACTGACAATCATCAAGGGCATGTTAAGGAGCGTAATAGAGCAGGCGATGCTACTGGTTCCGGTGTTAAAATCCAGTTTAAATCACCAGGGGGTAAAAATGTGAGCTATGAGAATCCACATGACAAAAATATTTATGGAGAAGCAAATATACCCGCTGCTTCATCCTCTCCTGCTGGTACTTCTAAAAGGAACTCCTTGAAGCAATCTTTGTCTGCTGAAGCATCCAACCCTGGACACGGGCAAGGCAGTAAAATTGGCCCTTCAAGTAGCTGGATGTCATCTCTGCAGCACATGTCTTCTGCTAAATGA 1275 0.4384 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEENVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCRNQPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREDYEFDYVFDWTILKYQQSQKSAVLPPLSPVPGASNSRAIPMDTDNHQGHVKERNRAGDATGSGVKIQFKSPGGKNVSYENPHDKNIYGEANIPAASSSPAGTSKRNSLKQSLSAEASNPGHGQGSKIGPSSSWMSSLQHMSSAK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00298 424 MobiDBLite consensus disorder prediction 371 424 - -
Viun3g00298 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Viun3g00298 424 MobiDBLite consensus disorder prediction 303 424 - -
Viun3g00298 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Viun3g00298 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00298 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun3g00298 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Viun3g00298 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00298 424 PANTHER CASEIN KINASE-RELATED 7 357 - -
Viun3g00298 424 MobiDBLite consensus disorder prediction 324 338 - -
Viun3g00298 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00298 424 FunFam Casein kinase I isoform delta-like 1 339 - -
Viun3g00298 424 Gene3D Transferase(Phosphotransferase) domain 1 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00298 Viun-Chr3 1719183 1723269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00298 9 215 EF-hand Containing Proteins AT4G23650 29.577 1.26e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Viun3g00298 Pkinase 3.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00298 K08960 - gmx:100779936 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00298 3 1719183 1723269 Viun3g00298 3 1719183 1723269 ECH
Viun3g00298 3 1719183 1723269 Viun4g00147 4 756149 760043 PCT