Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00290 ATGTGTGAGGCATTGGAAGAGGTTCCTTCAATGAAAGGAGGTTGCGAAGAAGGGTTGAACCTGAAGGCCACTGAGCTAAGGCTTGGGTTGCCAGGGCGTGAGTCGCCGGAGAGGGAGGGCGTGTTTAAGAGTGCGGTGGTGTCTGGGGCCAAGAGGGGCTTCTCCGATGCCATTCACGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGCTGTCTTGTTCTCTGCAAGGGGAACTGTTAGTGCTGCTAAGTCTCTCACACTCACTGCAACAGACTGCACCAACCAGCCAACTGCTTTGGGTGCTTCTGCTCTCAAAGAAACTGTTCCACTCTCTCCAAAACCATTGCATGAGAACAAACCTCAGATTTCTGCTCCAGCTGCCAAAGCGCAAGTTGTGGGATGGCCACCAATCCGTTCCTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGAAGATGCTGAGGCAGAAGCCAAGTCTGAATGTCTTTATGTTAAAGTGAGCATGGAAGGTGCCCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTTCCAGTCGAGAAAAATTAAGTGAAAGTAGATTGATGGATCTTCTCCATGGTTCAGAATATGTTCTTACTTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTCCCCTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCCGTGGAAAAGTGCAAAAGTCGTAACTAA 876 0.4737 MCEALEEVPSMKGGCEEGLNLKATELRLGLPGRESPEREGVFKSAVVSGAKRGFSDAIHGGSGNWNGGSEVGLGKDAVLFSARGTVSAAKSLTLTATDCTNQPTALGASALKETVPLSPKPLHENKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNEDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGVSSSREKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00290 291 FunFam Auxin-responsive protein 165 283 - -
Viun3g00290 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 278 IPR003311 GO:0005634|GO:0006355
Viun3g00290 291 SUPERFAMILY CAD & PB1 domains 167 272 - -
Viun3g00290 291 ProSiteProfiles PB1 domain profile. 170 273 IPR000270 GO:0005515
Viun3g00290 291 Pfam AUX/IAA family 24 282 IPR033389 -
Viun3g00290 291 Gene3D - 164 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00290 Viun-Chr3 1688297 1690738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00290 174 281 B3 DNA Binding Superfamily AT4G23980 32.407 5.15e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun3g00290 AUX_IAA 2.6e-85 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00290 3 1688297 1690738 Viun4g00166 4 856021 858985 PCT