Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00286 ATGAATAGAGGTGTGTTGCAAAGCTCACCGGTGCAACAAATGATGGCCGGAAACCCTAATAATTGGTGGAACATCACCACCACTCCTCCTCCGCCACCGCCTCCTTCTCAGCCTTCTTCTCCGTTCTTCTCCGCTCCTTCCAACTTTCTAACTCCGTATAACACCTCTTCTTCTCTTCCTCTTCCTTCTTGGCACGATAACAATCAAGACCTACCCGAGTCATGGAGCCAGCTACTCATGAGTGGAATGGTGTCTGAAGAAGAGAAAGGGGCCATGTGCCAGGTTCAGCAACAAATGCTGAATCAGGCTTCAAGGGCTTCTATTGTTGATGTTAAGCAAGAAGGGTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCCGCAAAACCAACTTGGCCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAACAACACAGATGCTAGGCCTCTTCCTCCAGACCCATCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTGGTTTCCCCGTTTGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATCGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGTTTGAAGAGGAAAGCAACAACTAGTGAGCAGGAATCTGAAGAAGAGGCGAAGAAGGACTTAAGGAGTAGAGGTTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGAGGATTTCGGTAG 1020 0.4745 MNRGVLQSSPVQQMMAGNPNNWWNITTTPPPPPPPSQPSSPFFSAPSNFLTPYNTSSSLPLPSWHDNNQDLPESWSQLLMSGMVSEEEKGAMCQVQQQMLNQASRASIVDVKQEGSVNSYVYGHGNEEFHPAKPTWPQIVPASSPKSCVTSFSSSMLDFSNNNTDARPLPPDPSSECNSTAAGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKATTSEQESEEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00286 339 FunFam transcription factor bHLH68 isoform X1 198 251 - -
Viun3g00286 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Viun3g00286 339 MobiDBLite consensus disorder prediction 25 41 - -
Viun3g00286 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 251 IPR036638 GO:0046983
Viun3g00286 339 CDD bHLH_AtbHLH_like 199 248 IPR045239 -
Viun3g00286 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 321 - -
Viun3g00286 339 MobiDBLite consensus disorder prediction 159 179 - -
Viun3g00286 339 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g00286 339 Gene3D - 198 252 IPR036638 GO:0046983
Viun3g00286 339 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00286 Viun-Chr3 1649300 1652593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00286 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.539 3.92e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00286 - - gmx:100785156 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00286 3 1649300 1652593 Viun3g00286 3 1649300 1652593 ECH
Viun3g00286 3 1649300 1652593 Viun4g00167 4 886992 891079 PCT