Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00285 ATGAATAGAGGTGTGTTGCAAAGCTCACCGGTGCAACAAATGATGGCCGGAAACCCTAATAATTGGTGGAACATCACCACCACTCCTCCTCCGCCACCGCCTCCTTCTCAGCCTTCTTCTCCGTTCTTCTCCGCTCCTTCCAACTTTCTAACTCCGTATAACACCTCTTCTTCTCTTCCTCTTCCTTCTTGGCACGATAACAATCAAGACCTACCCGAGTCATGGAGCCAGCTACTCATGAGTGGAATGGTGTCTGAAGAAGAGAAAGGGGCCATGTGCCAGGTTCAGCAACAAATGCTGAATCAGGCTTCAAGGGCTTCTATTGTTGATGTTAAGCAAGAAGGGTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCCGCAAAACCAACTTGGCCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAACAACACAGATGCTAGGCCTCTTCCTCCAGACCCATCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTGGTTTCCCCGTTTGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATCGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGGCAGCAACAATCTGTAAGAAATAATACCAACCCATTTCTGGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGTTTGAAGAGGAAAGCAACAACTAGTGAGCAGGAATCTGAAGAAGAGGCGAAGAAGGACTTAAGGAGTAGAGGTTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGAGGATTTCGGTAG 1047 0.4709 MNRGVLQSSPVQQMMAGNPNNWWNITTTPPPPPPPSQPSSPFFSAPSNFLTPYNTSSSLPLPSWHDNNQDLPESWSQLLMSGMVSEEEKGAMCQVQQQMLNQASRASIVDVKQEGSVNSYVYGHGNEEFHPAKPTWPQIVPASSPKSCVTSFSSSMLDFSNNNTDARPLPPDPSSECNSTAAGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNMRQQQSVRNNTNPFLVQGEKNCIFPEDPGQLLNENCLKRKATTSEQESEEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00285 348 FunFam transcription factor bHLH68 isoform X1 198 251 - -
Viun3g00285 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Viun3g00285 348 MobiDBLite consensus disorder prediction 25 41 - -
Viun3g00285 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 251 IPR036638 GO:0046983
Viun3g00285 348 CDD bHLH_AtbHLH_like 199 248 IPR045239 -
Viun3g00285 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 330 - -
Viun3g00285 348 MobiDBLite consensus disorder prediction 159 179 - -
Viun3g00285 348 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g00285 348 Gene3D - 199 253 IPR036638 GO:0046983
Viun3g00285 348 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00285 Viun-Chr3 1649300 1652596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00285 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.466 4.11e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00285 - - gmx:100785156 546.199