Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00284 ATGACCACCGTAACGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTCCGGCGCCGTCTCATCGCTACTCTTCTCCGTCACACTCCGATCTCCGACCAAAAGCACCTCAAACTCGCCGCAGACACTCTAGAAAGCGCGATATCCTTCTCCAGCCCCGCCCTGCGCACCTCCTCACTCTCTCTCGTGGAGAAGCTCCTCCTCCCTCTCCCTGACTTCGCTCTCTCCTCGCTACTCCTCTCGCTCGCCCACGCCCTCCGTAACCGTCCAACTGAATCCGCCACCAGCCTCCTCCGAATCTTTCACTCCAACAACAACAGCAACAAAAACGCTTCACTCGTTAGATCGGAAATCGCTCCTGCACTCTACGAGCGCCTCTTCTCTCCACACCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGGACGAATATTCTCTCCTCCACTCCCTCAACCTCCATACGTGAAAATGATTATTATTCAGTTTCTGAGGAGTACTCGGTGGTGCTGCCTTGCGCTAAGGTGCTGTCGAAGATGAGCGAGGAGCAGGCCGCAATGCTCCGGGAGGTGGAGAGAGAGTACGAAGAGGTCCTCGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAACGAGAACAGTGACGCGGGGATTAGTCCACCGTCGTTGATAATGAAGAGCGGTGCTGAAGGTGGCGGCAGGGAGAACATAACGGAGGAGATAACGCGAACGAATCTCTTAGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAAGGGAAGCATCTGTTGAATTTTTGAGCCCCAGTTCCAGCAGAAGATCTTCCCAGGAACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTGTCAAACCCAAAAATCCTTCAAAAGCTTGGACAACACCAGTCTATTTAAACTCAACCGCTGACGCCGATTTTTTTTCAGATGAGAGTTTGGTTAGTTCTTCTTCAGATTCCGAGGCAGAAAATGAGGAAAAGGACAAAAGTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCGTCTTCAAACAATCTAGTGGTTCACCAGATTATCCTATGGCCGACTTCGATAACACGCTTAATGGAATTGGGAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACTAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTTACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTGCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACTGAGGCAGTTGTGCAGTCAACAACCGTTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGGTTCTCAAGGAATCGGAAATGGCCGTGCTTCAAGTTGAGAAGTTCTGGAGAGGAGTGAATCTTGGAGTGGATATCCATAGAATGTTGGCAAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCCGAGATGGGGTCAAGCGACAACGCTGTTATCGAGACTCTCACCCGTGTGAAGACTGATGTAGAATGTATAATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGTATCTACTAAACCCTCCCATCACGAGTCTTGCGGAGATGGCCATAGTGGAGTCTCTCATAATGGTTTTGAATACGAAAGAGGAAGAATTGGTTACGATGTGTTTGAAGCCAAAAACAGCTGTAGTGCTTTTACTTGCTAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCATCGGTTGTCAATACCCTTTTCTCTGAAAATGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGACGAACATTGTTGATAAAGCAGAGTTGTCACCACTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGCTGGTCAAATTAAACAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCATTTAGCACAATGCATACTCTTCTTATTTATTTGAAGGCTGCTCCTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGTGAAGAGGCTATGGATACTCTTATTGCATGCCTGAGAAACACAGATTTTCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGTTTCGACTTCTTCGGAAACCCTCTAACCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTACTGGTGGGCCATCAGATTAGCAATTCCAGTCCAGAAATTGAGATAACTCCTGAAGACGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATACGTTCTAGTTAGCCATGAATTCGGCACTATTTTTGAGGCTTTGGCTGATGGCATGAAGAGCCAAAATTCAGAACTACGATCAGCATGCTTTATATCAGCTACCTGGCTCACGTACATGCTGACCATTCTACCGGATACAGGCATACAAGTAGCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCCCGGGATGTGGAAGACAGAATCCTTTCTATGATTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAGAGGATTGAGAGAGCTTAAGAGATCCTGTCCCTTAGCACCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACAATTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGGTGTCTGTCACATGCTTTAAGGATAAAATATTTTCGGGTCATACAGATGGCACGATTAAGGTCTGGACATTAAAGAATAATTCATTCCATCTGTTGCAAGAAATTCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAATCTGGTGACACACTATATAGTGGTTCACTTGACCGAACGTCAAAGGTCTGGTCTATTGGAAAGTCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAATTGTAACCAATAGCTTAGCTTGTTTCGTTCCGCAGGGGACTGGTATCAAGGTTCAGTCACTGAGTGGAGAGTCAAAGCTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTTAATGGGAAGTTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGGAACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTAGCGAAAGCAAATCCTATTCATGCAATTCAAATTCATGGTGAACTTATATACGCAGCTGGTTCTTCCTTTGATGGATCTTCTATAAAGTTCCAGTTACAATATGGTTGGATCACTGCAAACTGGATCTGA 3798 0.4479 MTTVTVTTRSQILRHTAAFTSSVLSQSELRRRLIATLLRHTPISDQKHLKLAADTLESAISFSSPALRTSSLSLVEKLLLPLPDFALSSLLLSLAHALRNRPTESATSLLRIFHSNNNSNKNASLVRSEIAPALYERLFSPHLFPVFRWFDEQRTNILSSTPSTSIRENDYYSVSEEYSVVLPCAKVLSKMSEEQAAMLREVEREYEEVLDENCRVLAEYFKEVLVNENSDAGISPPSLIMKSGAEGGGRENITEEITRTNLLENGRYNPIWSEREREASVEFLSPSSSRRSSQEPFYPQRVFSRIVKPKNPSKAWTTPVYLNSTADADFFSDESLVSSSSDSEAENEEKDKSIALLEPRQSQIQEQMQTVFKQSSGSPDYPMADFDNTLNGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNFTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDTEAVVQSTTVSTSPNSVITQATVDGMMSELRCAINNLYMSEVLKESEMAVLQVEKFWRGVNLGVDIHRMLAKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSSDNAVIETLTRVKTDVECIMALFKNGLTEAVVLLYLLNPPITSLAEMAIVESLIMVLNTKEEELVTMCLKPKTAVVLLLARITGSSEEIIASSVVNTLFSENAIGTIVSSFGADLAKERIAAVEILLRCMEEDGTCRTNIVDKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLKAAPHDHCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLIACLRNTDFPVTQLAAADTIMSLQGSFDFFGNPLTREVLLKRAGIDKSSRSLVLVGHQISNSSPEIEITPEDEKAADDWERRIAYVLVSHEFGTIFEALADGMKSQNSELRSACFISATWLTYMLTILPDTGIQVAARACLLKQFIAKLNSARDVEDRILSMIALNSFLHFPEGLGDLTSYTKDILRGLRELKRSCPLAPKMLKSLVEENESKADNWIHKELIKEDCSENGEVVSVTCFKDKIFSGHTDGTIKVWTLKNNSFHLLQEIQEHTKAVTNLVISESGDTLYSGSLDRTSKVWSIGKSAIHCVQVYDMKDQIHNLIVTNSLACFVPQGTGIKVQSLSGESKLLNSSKYVKCLAHVNGKLYCGCHDSSVQEIHLGTGTVNTIQSGYKRLLAKANPIHAIQIHGELIYAAGSSFDGSSIKFQLQYGWITANWI 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00284 1265 Gene3D - 543 1003 IPR011989 -
Viun3g00284 1265 Coils Coil 700 720 - -
Viun3g00284 1265 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1096 1129 - -
Viun3g00284 1265 SUPERFAMILY RING/U-box 397 473 - -
Viun3g00284 1265 SUPERFAMILY WD40 repeat-like 1052 1249 IPR036322 GO:0005515
Viun3g00284 1265 CDD RING-Ubox_PUB 399 451 IPR045210 -
Viun3g00284 1265 ProSiteProfiles Trp-Asp (WD) repeats profile. 1096 1129 IPR001680 GO:0005515
Viun3g00284 1265 SMART Ubox_2 401 465 IPR003613 GO:0004842|GO:0016567
Viun3g00284 1265 Pfam U-box domain 399 469 IPR003613 GO:0004842|GO:0016567
Viun3g00284 1265 SUPERFAMILY ARM repeat 33 1019 IPR016024 -
Viun3g00284 1265 Coils Coil 192 212 - -
Viun3g00284 1265 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1252 - -
Viun3g00284 1265 SMART WD40_4 1089 1128 IPR001680 GO:0005515
Viun3g00284 1265 SMART WD40_4 1047 1084 IPR001680 GO:0005515
Viun3g00284 1265 ProSiteProfiles U-box domain profile. 397 472 IPR003613 GO:0004842|GO:0016567
Viun3g00284 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 474 IPR013083 -
Viun3g00284 1265 Gene3D - 1043 1257 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00284 Viun-Chr3 1639309 1646228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00284 399 465 U-box Gene Family AT1G23030 52.239 1.12e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00284 - - vun:114176884 2353.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00284 3 1639309 1646228 Viun3g00284 3 1639309 1646228 ECH