Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00283 ATGACCACCGTAACGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTCCGGCGCCGTCTCATCGCTACTCTTCTCCGTCACACTCCGATCTCCGACCAAAAGCACCTCAAACTCGCCGCAGACACTCTAGAAAGCGCGATATCCTTCTCCAGCCCCGCCCTGCGCACCTCCTCACTCTCTCTCGTGGAGAAGCTCCTCCTCCCTCTCCCTGACTTCGCTCTCTCCTCGCTACTCCTCTCGCTCGCCCACGCCCTCCGTAACCGTCCAACTGAATCCGCCACCAGCCTCCTCCGAATCTTTCACTCCAACAACAACAGCAACAAAAACGCTTCACTCGTTAGATCGGAAATCGCTCCTGCACTCTACGAGCGCCTCTTCTCTCCACACCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGGACGAATATTCTCTCCTCCACTCCCTCAACCTCCATACGTGAAAATGATTATTATTCAGTTTCTGAGGAGTACTCGGTGGTGCTGCCTTGCGCTAAGGTGCTGTCGAAGATGAGCGAGGAGCAGGCCGCAATGCTCCGGGAGGTGGAGAGAGAGTACGAAGAGGTCCTCGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAACGAGAACAGTGACGCGGGGATTAGTCCACCGTCGTTGATAATGAAGAGCGGTGCTGAAGGTGGCGGCAGGGAGAACATAACGGAGGAGATAACGCGAACGAATCTCTTAGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAAGGGAAGCATCTGTTGAATTTTTGAGCCCCAGTTCCAGCAGAAGATCTTCCCAGGAACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTGTCAAACCCAAAAATCCTTCAAAAGCTTGGACAACACCAGTCTATTTAAACTCAACCGCTGACGCCGATTTTTTTTCAGATGAGAGTTTGGTTAGTTCTTCTTCAGATTCCGAGGCAGAAAATGAGGAAAAGGACAAAAGTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCGTCTTCAAACAATCTAGTGGTTCACCAGATTATCCTATGGCCGACTTCGATAACACGCTTAATGGAATTGGGAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACTAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTTACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTGCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACTGAGGCAGTTGTGCAGTCAACAACCGTTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGGTTCTCAAGGAATCGGAAATGGCCGTGCTTCAAGTTGAGAAGTTCTGGAGAGGAGTGAATCTTGGAGTGGATATCCATAGAATGTTGGCAAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCCGAGATGGGGTCAAGCGACAACGCTGTTATCGAGACTCTCACCCGTGTGAAGACTGATGTAGAATGTATAATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGTATCTACTAAACCCTCCCATCACGAGTCTTGCGGAGATGGCCATAGTGGAGTCTCTCATAATGGTTTTGAATACGAAAGAGGAAGAATTGGTTACGATGTGTTTGAAGCCAAAAACAGCTGTAGTGCTTTTACTTGCTAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCATCGGTTGTCAATACCCTTTTCTCTGAAAATGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGACGAACATTGTTGATAAAGCAGAGTTGTCACCACTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGCTGGTCAAATTAAACAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCATTTAGCACAATGCATACTCTTCTTATTTATTTGAAGGCTGCTCCTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGTGAAGAGGCTATGGATACTCTTATTGCATGCCTGAGAAACACAGATTTTCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGTTTCGACTTCTTCGGAAACCCTCTAACCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTACTGGTGGGCCATCAGATTAGCAATTCCAGTCCAGAAATTGAGATAACTCCTGAAGACGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATACGTTCTAGTTAGCCATGAATTCGGCACTATTTTTGAGGCTTTGGCTGATGGCATGAAGAGCCAAAATTCAGAACTACGATCAGCATGCTTTATATCAGCTACCTGGCTCACGTACATGCTGACCATTCTACCGGATACAGGCATACAAGTAGCAGCTCGTGCTTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCCCGGGATGTGGAAGACAGAATCCTTTCTATGATTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAGAGGATTGAGAGAGCTTAAGAGATCCTGTCCCTTAGCACCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACAATTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGGTGTCTGTCACATGCTTTAAGGATAAAATATTTTCGGGTCATACAGATGGCACGATTAAGGTCTGGACATTAAAGAATAATTCATTCCATCTGTTGCAAGAAATTCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAATCTGGTGACACACTATATAGTGGTTCACTTGACCGAACGTCAAAGGTCTGGTCTATTGGAAAGTCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAATTGTAACCAATAGCTTAGCTTGTTTCGTTCCGCAGGGGACTGGTATCAAGGTTCAGTCACTGAGTGGAGAGTCAAAGCTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTTAATGGGAAGTTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGGAACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTAGCGAAAGCAAATCCTATTCATGCAATTCAAATTCATGGTGAACTTATATACGCAGCTGGTTCTTCCTTTGATGGATCTTCTATAAAGATATGGAACAGTTCCAGTTACAATATGGTTGGATCACTGCAAACTGGATCTGAAGTTCGGACAATGGCAGTGAGCTCAGGATTGATTTATTTGGGGTGCAAAGGAGGTACTGTAGAAATTTGGGATAAGAAGAAAAGCAGTAAAGTTGACACCTTGCAAATGGGTACCAATTGTAGGGTCAATTGTATGGCTCTAGACAGCAATGAAGAAGTTTTGGTAATTGGAACTTCAGCTGGACAAATTCAGGCTTGGGAAATGAATTAA 4020 0.4453 MTTVTVTTRSQILRHTAAFTSSVLSQSELRRRLIATLLRHTPISDQKHLKLAADTLESAISFSSPALRTSSLSLVEKLLLPLPDFALSSLLLSLAHALRNRPTESATSLLRIFHSNNNSNKNASLVRSEIAPALYERLFSPHLFPVFRWFDEQRTNILSSTPSTSIRENDYYSVSEEYSVVLPCAKVLSKMSEEQAAMLREVEREYEEVLDENCRVLAEYFKEVLVNENSDAGISPPSLIMKSGAEGGGRENITEEITRTNLLENGRYNPIWSEREREASVEFLSPSSSRRSSQEPFYPQRVFSRIVKPKNPSKAWTTPVYLNSTADADFFSDESLVSSSSDSEAENEEKDKSIALLEPRQSQIQEQMQTVFKQSSGSPDYPMADFDNTLNGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNFTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDTEAVVQSTTVSTSPNSVITQATVDGMMSELRCAINNLYMSEVLKESEMAVLQVEKFWRGVNLGVDIHRMLAKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSSDNAVIETLTRVKTDVECIMALFKNGLTEAVVLLYLLNPPITSLAEMAIVESLIMVLNTKEEELVTMCLKPKTAVVLLLARITGSSEEIIASSVVNTLFSENAIGTIVSSFGADLAKERIAAVEILLRCMEEDGTCRTNIVDKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLKAAPHDHCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLIACLRNTDFPVTQLAAADTIMSLQGSFDFFGNPLTREVLLKRAGIDKSSRSLVLVGHQISNSSPEIEITPEDEKAADDWERRIAYVLVSHEFGTIFEALADGMKSQNSELRSACFISATWLTYMLTILPDTGIQVAARACLLKQFIAKLNSARDVEDRILSMIALNSFLHFPEGLGDLTSYTKDILRGLRELKRSCPLAPKMLKSLVEENESKADNWIHKELIKEDCSENGEVVSVTCFKDKIFSGHTDGTIKVWTLKNNSFHLLQEIQEHTKAVTNLVISESGDTLYSGSLDRTSKVWSIGKSAIHCVQVYDMKDQIHNLIVTNSLACFVPQGTGIKVQSLSGESKLLNSSKYVKCLAHVNGKLYCGCHDSSVQEIHLGTGTVNTIQSGYKRLLAKANPIHAIQIHGELIYAAGSSFDGSSIKIWNSSSYNMVGSLQTGSEVRTMAVSSGLIYLGCKGGTVEIWDKKKSSKVDTLQMGTNCRVNCMALDSNEEVLVIGTSAGQIQAWEMN 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00283 1339 Gene3D - 1045 1158 IPR015943 GO:0005515
Viun3g00283 1339 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1338 - -
Viun3g00283 1339 Coils Coil 700 720 - -
Viun3g00283 1339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1096 1129 - -
Viun3g00283 1339 SUPERFAMILY RING/U-box 397 473 - -
Viun3g00283 1339 SMART WD40_4 1216 1255 IPR001680 GO:0005515
Viun3g00283 1339 SMART WD40_4 1258 1294 IPR001680 GO:0005515
Viun3g00283 1339 SMART WD40_4 1089 1128 IPR001680 GO:0005515
Viun3g00283 1339 SMART WD40_4 1297 1337 IPR001680 GO:0005515
Viun3g00283 1339 SMART WD40_4 1047 1084 IPR001680 GO:0005515
Viun3g00283 1339 CDD RING-Ubox_PUB 399 451 IPR045210 -
Viun3g00283 1339 SUPERFAMILY WD40 repeat-like 1067 1338 IPR036322 GO:0005515
Viun3g00283 1339 Pfam WD domain, G-beta repeat 1093 1128 IPR001680 GO:0005515
Viun3g00283 1339 ProSiteProfiles Trp-Asp (WD) repeats profile. 1096 1129 IPR001680 GO:0005515
Viun3g00283 1339 Gene3D - 1159 1339 IPR015943 GO:0005515
Viun3g00283 1339 SMART Ubox_2 401 465 IPR003613 GO:0004842|GO:0016567
Viun3g00283 1339 Coils Coil 192 212 - -
Viun3g00283 1339 SUPERFAMILY ARM repeat 33 1019 IPR016024 -
Viun3g00283 1339 Gene3D - 528 791 IPR011989 -
Viun3g00283 1339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 474 IPR013083 -
Viun3g00283 1339 ProSiteProfiles U-box domain profile. 397 472 IPR003613 GO:0004842|GO:0016567
Viun3g00283 1339 Pfam U-box domain 399 469 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00283 Viun-Chr3 1638809 1646221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00283 399 476 U-box Gene Family AT1G71020 46.154 1.13e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00283 - - vun:114176884 2528.05