Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00280 ATGGAGATGGATCCTCCACCCAAGAGCTGGAGCATCCACACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGACGGCCTCATCGTGGCCCTCAAGGAAATCCACGACTACCAGTCCGCTTTCCGAGAAATCGACGCGTTGCAGCTCCTCCAGGGATTCCCAAACGTCATCGTTATGCACGAATATTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTTATCGCTGACGCCGCCAAGGCCAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCATAGCAACATGGTCCTCCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAACGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTCACGGAGCCTGGAATTGATAATGACGACACTAGTCCTAATACTCCCGATGGAAATGCAACATGCACCACAAGTGACATAAACAAGGAAGATGATGAAGAGAATGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATCAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGAATTGAAGCCCGTCTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTACTTCATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCGATATCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTCAATATCACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1182 0.5068 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLIVALKEIHDYQSAFREIDALQLLQGFPNVIVMHEYFWRDDEDAVLVLEFLRTDLATVIADAAKANQPLPAGQLKRWMIQILSGVDACHSNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGIDNDDTSPNTPDGNATCTTSDINKEDDEENELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEARLPNRSPDEVALVKRLVCYDPAKRATAMELLHDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFNITRTGTGFSIQFP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00280 393 FunFam Cyclin-dependent kinase F-1 13 107 - -
Viun3g00280 393 SUPERFAMILY Protein kinase-like (PK-like) 15 341 IPR011009 -
Viun3g00280 393 Pfam Protein kinase domain 22 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00280 393 ProSiteProfiles Protein kinase domain profile. 22 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00280 393 PANTHER CELL DIVISION PROTEIN KINASE 21 341 - -
Viun3g00280 393 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Viun3g00280 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Viun3g00280 393 SMART serkin_6 22 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00280 393 MobiDBLite consensus disorder prediction 350 378 - -
Viun3g00280 393 Gene3D Transferase(Phosphotransferase) domain 1 109 338 - -
Viun3g00280 393 FunFam Cyclin-dependent kinase F-1 109 341 - -
Viun3g00280 393 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00280 Viun-Chr3 1619802 1621911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00280 173 393 Core Cell Cycle Gene Families AT4G28980 58.577 5.15e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Viun3g00280 Pkinase 1.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00280 - - vum:124837370 755.747