Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00279 ATGGGAGAAGGGGAAGGAGAGGGGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGCTCGATTTCACCGGCTTCGGCGGGATGCCACCGCAGTCGCCGGTGGTTTTGCCGCTGCAGCCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAGTCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCCAAAAAGCAAAAGCAGTGTAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGCTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCACCAATATCAAAGAAACGAAAAGGTCAAGAACTCTTATTTGGGTCAACCATCAAGGATCCATCACTTGGAAGGCTGGGACAACAGGCAAACAATGTCAGAGCTTCTGCACCATCCTCATCCTTGTCACCTATCCCAGGTGGTCGTGTAGGACCGGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCAAGAGCAATTACCAAGCCAAACGGAAGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTTGAGTGCAAACCAGACAGATAAAATCAGCCCCGATAATTCTAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCAAGACACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCGCATGCTTGCAACACATCTACGCAACCGCCATATGGACAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAAAATTGTATTGACAAAATTTAGAGACTTTCTCAATAGGGTCATCACTATGGGAGAAATAAATGAAACGAAGTGTTCTTCATTAGCTAGAAGTGAATTAGAGAGTCAAAAGGAAAACCCAAACAACAATTGCACTGGAAATGCCAGTACTGAGACAGCGCATCAGCAAGGAACCACTAATAATAATGGTGTTGCCAAAGCTGCGGGCAACATTACTTCTACATCTTCGTTCCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1656 0.4487 MGEGEGEGSDCAPKNVVPNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQSPVVLPLQPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQANNVRASAPSSSLSPIPGGRVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDHTETSLASSTQEQLPSQTEANVEKAMADDDCLSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTSASPIGSRAHACNTSTQPPYGQGMTEVYAEQEKIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKENPNNNCTGNASTETAHQQGTTNNNGVAKAAGNITSTSSFPGGSLIPEK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00279 551 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Viun3g00279 551 Coils Coil 123 143 - -
Viun3g00279 551 PANTHER TESMIN/TSO1-RELATED 51 485 IPR028307 -
Viun3g00279 551 SMART CXC_2 173 214 IPR033467 -
Viun3g00279 551 SMART CXC_2 88 128 IPR033467 -
Viun3g00279 551 MobiDBLite consensus disorder prediction 391 405 - -
Viun3g00279 551 MobiDBLite consensus disorder prediction 361 377 - -
Viun3g00279 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Viun3g00279 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Viun3g00279 551 MobiDBLite consensus disorder prediction 282 301 - -
Viun3g00279 551 MobiDBLite consensus disorder prediction 352 418 - -
Viun3g00279 551 MobiDBLite consensus disorder prediction 496 545 - -
Viun3g00279 551 MobiDBLite consensus disorder prediction 496 551 - -
Viun3g00279 551 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00279 Viun-Chr3 1609695 1616678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00279 9 499 CPP Transcription Factor Family AT4G29000 59.394 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Viun3g00279 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00279 - - gmx:100786353 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00279 3 1609695 1616678 Viun3g00279 3 1609695 1616678 ECH