Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00273 ATGTATAGATCATTTCTGAGATGTGATGATCCAAAAGGAGTTGTAGGATGTGGGACAATCAGGAAATACAGAACTCGTTCTCACAAAGTGAAGGACAAGACAAAAATGCAAGAGACAAGTGAAATAATGGAAACATCCTTGATCAACAAAAGATACAAAGAGGAGAAGAAGGTCGCCGAAGAATGTGATGGAAATCTAGTTGGTCCATCATCTTTGCAGCTCACACAGGTCTTCGGAAAGGATCATATGCTAGATTCATGGTCTAGAGATATTATATGTGAAGGAAAGTCCGAAGATATTGCAAAAGGTATTTTAAAAGGGACTATTGGTCTGCAAGATTCTCTAAGCATGCTTCGCAAGTTGCAAGAGGATGCCGCACAACATACACCTTCTTTTGGGAGAAAACAGACTGAGAAACCAGAAAGAGACAGAATTGATGGAAACAAGATTGGTAGAAGAGAGGCTAATCCATTAGGGGAACAAAGTAATACAAAGGGGTTTCAAAGACCACAGCTTTCTGCCGGTGGTTCTTCAAGTAACTGCAAAGAGGAACTTAAGAAGGTGATTAAGGAGAGTTTGGTTAGGCAAAATATGTTTCCAAAGACCTCTGAAGGATTTCATTCAGGTTCAGAAACTTTTCATATAAGCACAAGCCAATGTTCTGGGGTCAAGACTGACACCCTTTCTGATCCTTCTTTATCAGTAATAGCTTCAAAGATTGAAAGAGGACCTAGCCTAGTTTTCAAGCTGATGGGTTTAGAAGAAGGTCCCTCAAAATCATTTCCAGCTGCTAAGCAAAAACTGTTGGGTGGTGAGATAGATATGTCAAAGGTCAGAAACAATGATTCTACAGCTGAGAAGGTTAATCCAGAACTAAAACCCGTGAGGGAAACTCTTGACACAATGCATTTCAAAGGTATTTCTAAGGAGAATTTTGTCAAACATGTTCATCATCATTTCAATGACACCAGTTCCAAGCAGTTTGTTGATTTATCTCACATTTCACTTACGGAACCTCAATGTACAATATACCAGCAATCAGAAAAAAGAGCCTATGTTCCAGTTCTTCCAAAAGAGTTGACAAAACTGAGAAGAGAAATACTCTCTTCCAAAACTATCAAACATAGAAAAGGTTCCAGTTCCACCAACATGGGAAAAGAAATGGAAAAGGGTATGAGGAAACGGCTTAAGAAAGAGGAAGGACCTAATTTTCTCAAAGAGGATGCAAAAGGAAGCATTCCTGTTGAAGAATATGCGGGTAAGGTAAAACTATACTGTCACATTGGTCACACATCACATGTAAATGAGACAATTGATAGAAAATGGAAGGTACGGCCCATTAGTAGAAAACAGACAGAAAAGGATATCTCACAACCTACAATTGTGGCAGAACATCAGTACAAACGAGAAATCCCCTCCACAAAATTGAGCAAGCTGAAAAGTGGATCCAGAATCGACAAGAATGAGATTTCCTGCCTAAAGAGCAGAGGTTCAGACAACAAAAAAACTACGAATTCCAAGGATGTTAATGTTGACAATAAAAAGGTTAATTCCGTGATAGATTCCTTAACAGGTAGAAAGAATCAGATGAAAGAACAAAGCACTGTTGCAGAGCCAGAACCAGCTAAACTAACTGTTGAACAAATCAGGCAGAGAGAAAAGAAGAAAAATTACCCCGAGATTAGAATCTCCACTAGACTAGAAGATGAGCTCTCGATGGTGTGTGAAGCAGATGCCTTCACAAATAAGATTGGAGAAAAATGCAAGCTGAGGAAGAGTTCTTCGGGGGATGATCTCATTACGCTGCTCAAATCTGAACATAAAAATGATGGTATCAATGCTTATAGCATCGACGCTGACAGAGAAGGGACAGAGCTGAAACATTTTCTTCTAACGAGTCCATCATTCATAGGACACGCAAAGAAGCTCTTCAATCTTGATGTGGATCGTCCCAACACCCTAAAAAAAGATGAAACTGTTTGCAGCATGGCCAACATGAGGCTTTACTTGGATTGCGCTTACGAACTGACCGAACGTAAAAGTCTTGAAAACTCAAGATTACGCATCTCCTTATGCAGGTTGGTGGAAGAAATCTGTGATGGCATTGAGAATCTGAAATTTTACAGAGAAGATTATGATCGTGGAGAGGAAGATTTTTCGTACAATAATGACACATTTGCAATGATGGAAAAAGACATGAAGTGCAACGGAGAGATAAATGGAACGTGGGAAAGTGGTTGGAGAACAGGCTTTTGTGCAGATGAGGCTCAACTGGTTGTCAATAAAATAGAGAACCTGATTATAACTGGATTAATTGAGGACCTTGTAATCAATTTATTAGCTTAA 2346 0.393 MYRSFLRCDDPKGVVGCGTIRKYRTRSHKVKDKTKMQETSEIMETSLINKRYKEEKKVAEECDGNLVGPSSLQLTQVFGKDHMLDSWSRDIICEGKSEDIAKGILKGTIGLQDSLSMLRKLQEDAAQHTPSFGRKQTEKPERDRIDGNKIGRREANPLGEQSNTKGFQRPQLSAGGSSSNCKEELKKVIKESLVRQNMFPKTSEGFHSGSETFHISTSQCSGVKTDTLSDPSLSVIASKIERGPSLVFKLMGLEEGPSKSFPAAKQKLLGGEIDMSKVRNNDSTAEKVNPELKPVRETLDTMHFKGISKENFVKHVHHHFNDTSSKQFVDLSHISLTEPQCTIYQQSEKRAYVPVLPKELTKLRREILSSKTIKHRKGSSSTNMGKEMEKGMRKRLKKEEGPNFLKEDAKGSIPVEEYAGKVKLYCHIGHTSHVNETIDRKWKVRPISRKQTEKDISQPTIVAEHQYKREIPSTKLSKLKSGSRIDKNEISCLKSRGSDNKKTTNSKDVNVDNKKVNSVIDSLTGRKNQMKEQSTVAEPEPAKLTVEQIRQREKKKNYPEIRISTRLEDELSMVCEADAFTNKIGEKCKLRKSSSGDDLITLLKSEHKNDGINAYSIDADREGTELKHFLLTSPSFIGHAKKLFNLDVDRPNTLKKDETVCSMANMRLYLDCAYELTERKSLENSRLRISLCRLVEEICDGIENLKFYREDYDRGEEDFSYNNDTFAMMEKDMKCNGEINGTWESGWRTGFCADEAQLVVNKIENLIITGLIEDLVINLLA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00273 781 MobiDBLite consensus disorder prediction 134 153 - -
Viun3g00273 781 PANTHER OS01G0228800 PROTEIN-RELATED 1 779 - -
Viun3g00273 781 MobiDBLite consensus disorder prediction 380 396 - -
Viun3g00273 781 MobiDBLite consensus disorder prediction 157 180 - -
Viun3g00273 781 MobiDBLite consensus disorder prediction 123 181 - -
Viun3g00273 781 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00273 Viun-Chr3 1591366 1595366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00273 626 776 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 31.902 3.81e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00273 - - var:108346558 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00273 3 1591366 1595366 Viun3g00273 3 1591366 1595366 ECH
Viun3g00273 3 1591366 1595366 Viun4g00186 4 967108 971339 PCT