Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00270 ATGACTTCTCTCTCCGTCTTTCCCTCACTCACATCGCTTCAAAACCCTAACTTCACTCATCCCCGCCTCTCCAATTCCATCTATTTTCCTTTCAATTCCGCGCAATCTTTCGTACCACTCTCTCGCCGTAATTTCCTATGCAGAGCATTCAGAGATCCCGGCGAGGACATCAAAGCGGTCATCAAGACCGACGACAGCGGCGGCGGAGATGGGGGTGGAGACGGTGGGGGTGACCGGGACTCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGCTGAATTTCACTTCTGATGACGCCAAAACGGTACTTGCTGCTATCGCAATTTCGCTTGCGTTTCGCACGTTCGTGGCGGAGCCTAGGTACATTCCCTCGCTGTCAATGTACCCTACATTTGATGTTGGCGATAGAATTGTTGCTGAAAAGGTTTCTTACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTCAAAAGCCCTCCAGTGCTTCAAGAAGTTGGATATAGTGATGACGATGTTTTTATAAAGCGTGTGGTTGCAAGGGAAGGTGATATTGTGGAGGTCCGTAAAGGTCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGATTACATTCTTGAACCACCTGCATATGAGATGAAACCCACGCGTGTACCAGAGAACTACGTGTTTGTGATGGGAGACAATCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCTTGCCATCCAAGAACATCATAGGTAGATCAGTATTTCGGTATTGGCCACCAAATAGAATTGCTGGAACAGTTTCAAAGGATAGCTGCAATGTTGAAACCACGCAGCAGGAGAGTGCAGAGACTGCTCTTCCTTCTCAATGA 864 0.4722 MTSLSVFPSLTSLQNPNFTHPRLSNSIYFPFNSAQSFVPLSRRNFLCRAFRDPGEDIKAVIKTDDSGGGDGGGDGGGDRDSEKKEGPLPEWLNFTSDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAREGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSCNVETTQQESAETALPSQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00270 287 Gene3D Umud Fragment, subunit A 112 270 - -
Viun3g00270 287 SUPERFAMILY LexA/Signal peptidase 113 262 IPR036286 -
Viun3g00270 287 MobiDBLite consensus disorder prediction 60 89 - -
Viun3g00270 287 NCBIfam signal peptidase I 100 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun3g00270 287 ProSitePatterns Signal peptidases I signature 3. 223 236 IPR019758 GO:0004252|GO:0016020
Viun3g00270 287 Pfam Signal peptidase, peptidase S26 99 256 IPR019533 GO:0004252|GO:0006465
Viun3g00270 287 CDD S26_SPase_I 118 250 IPR019533 GO:0004252|GO:0006465
Viun3g00270 287 ProSitePatterns Signal peptidases I serine active site. 124 131 IPR019756 GO:0004252|GO:0016020
Viun3g00270 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun3g00270 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun3g00270 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 218 237 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun3g00270 287 FunFam Peptidase/ serine-type peptidase 124 255 - -
Viun3g00270 287 PANTHER SIGNAL PEPTIDASE I 86 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00270 Viun-Chr3 1556514 1559736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00270 127 257 MADS-box Gene Family AT1G29960 31.818 2.88e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00270 K03100 - gmx:100815810 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00270 3 1556514 1559736 Viun3g00270 3 1556514 1559736 ECH