Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00259 ATGAGTGCTCCCTCTGACTCCAATCACACCCACAACAACTCCTTCCTCAAGATGCCCACCATCAAGTTTACTAAACTCTTCATCAATGGACATTTTCTTGATTCCATATCAGGGAGGACATTTGAGACTATAGATCCGAGAACAGAAGAGGTAATTGCAAGAGTGAGTGAGGGAGACAGAGAAGACATTGATGTTGCAGTTGAAGCAGCACGTGAAGCGTTTGACCGAGGTCCATGGCCTCGCATGGCTGCCTCTGAGAGGGCAAAAATAATGATGAAATGGGCGGACCTAATTGACGAAAACATAGAAGAAGTTGCAGCATTAGATAGCGTGGATGGTGGAAAGTTGTACTTTTTCAACAAGTTTGCAGAAATTCCTTCAGCAGCGAATGCTCTACGTTACTATGCAGGAGCTGCTGATAAAATTCATGGGCAAGTACTAAAAGTGAACGGGAATTTCCATGCATATACACTGATGGAACCAATTGGTGTTGTGGGACACATAATTCCCTGGAATGCACCTAGTCACTCGTTTTTCATCAAGGTTAGCCCTTCCTTAGCTGCAGGCTGCACCATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTTCTATGCTCATCTTGCTAAGCTCGCTGGAATCCCAGATGGAGTGCTGAATGTAGTACCCGGATTTGGTTCAACTGCTGGTGCAGCAATAAGCTCGCACATGGGAATTGATGCGGTCAGTTTTACTGGTTCAGTTGAAGTAGGGCGCGAAGTGATGCAAGCTGCAGCAAGGAGCAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACCAAGCAGTGGAGCTTGCACTCATTGGCATCATGTCTAACAAGGGAGAAGTTTGTGTGGCTAGTTCTCGTGTGTATGTCCAGGAAGGGATCTATGATGAATTTGAAAAGAAGTTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGAGATCCTTTTGATCCAAAATCGCAGCAAGGGCCTCAAACTAACAAGAACCAACTGGAGAAAATACTTTCCTATATTGAGCACGGAAAGAGAGAGGGTGCAACCCTTTTGACCGGAGGTAACAGAGTGGGCAACAAAGGTTACTACATTGAACCCACAATTTTCTCCGATGTAAAGGAGGACATGGTTATAGCACAAGAGGAAATATTTGGCCCTGTATTGGCATTGATGAAATTTAAGACAATAGAGGAAGCAATTAAAAGTGCGAACAATACGAAGTACGGTTTAGCAGCAGGCATTATAACAAACAGTTTGGATACATCAAACACAGTGTCAAGATCGATTCGTGCAGGCATTGTTTGGATCAACTGCTATTTCACTGTGGGAAGTGATGTTCCTTTTGGAGGGTACAAGATGAGTGGATTTGGAAGAGATTTGGGCTTGGAGGCCCTTCACAAATACTTGCAAATTAAATCTGTTGTTACACCTATTCACAATTCGCCTTGGCTTTGA 1515 0.4403 MSAPSDSNHTHNNSFLKMPTIKFTKLFINGHFLDSISGRTFETIDPRTEEVIARVSEGDREDIDVAVEAAREAFDRGPWPRMAASERAKIMMKWADLIDENIEEVAALDSVDGGKLYFFNKFAEIPSAANALRYYAGAADKIHGQVLKVNGNFHAYTLMEPIGVVGHIIPWNAPSHSFFIKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGSTAGAAISSHMGIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDQAVELALIGIMSNKGEVCVASSRVYVQEGIYDEFEKKLVEKAKAWVVGDPFDPKSQQGPQTNKNQLEKILSYIEHGKREGATLLTGGNRVGNKGYYIEPTIFSDVKEDMVIAQEEIFGPVLALMKFKTIEEAIKSANNTKYGLAAGIITNSLDTSNTVSRSIRAGIVWINCYFTVGSDVPFGGYKMSGFGRDLGLEALHKYLQIKSVVTPIHNSPWL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00259 504 FunFam Aldehyde dehydrogenase3 274 463 - -
Viun3g00259 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 274 463 IPR016163 GO:0016620
Viun3g00259 504 Pfam Aldehyde dehydrogenase family 37 494 IPR015590 GO:0016491
Viun3g00259 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 492 IPR016162 GO:0016491
Viun3g00259 504 SUPERFAMILY ALDH-like 14 499 IPR016161 GO:0016491
Viun3g00259 504 FunFam Aldehyde dehydrogenase, putative 466 492 - -
Viun3g00259 504 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 28 293 - -
Viun3g00259 504 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 270 277 IPR029510 GO:0016491
Viun3g00259 504 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 12 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00259 Viun-Chr3 1460554 1463469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00259 16 504 Aldehyde Dehydrogenase Gene Family AT3G24503 69.796 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00259 K12355 - gmx:100527654 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00259 3 1460554 1463469 Viun4g00214 4 1217268 1222621 PCT