Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00258 ATGAAGAAGAAACAAGCACACTCCTCTCATCTCACACTTCTCCTTCTCCTCGTTGCCGTTTTCCTGGGCACATGTGCCAATGCCTCCCCTGTCACGCTCACCCAATCGCGCCACCTTCTCTACTACAGAGACGAGTTCGGAGACAGAGGGGAGAATGTCACCGTTGACCCCTCCCTTGTTTTCGAAAATAACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCAAGCCATTTTATCTGATCCCCGTAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGGGTATACTGTGCACCCGCGCTCGACGACCCCTCCGTCCGTACAGTCGCCGGCATTGATCTCAACCATGGCGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACCTTCCAGAGGTTGCTACTCCTCTTCGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCTGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTCGGTTCAACGAATTCGAAGGGGCTGTTCCCAGGGAACTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAACCGTTTCGTCTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAACCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTTGGAAATGCCGTCAGCTTGGAGCAGCTCAACGTGGCTCATAACTTACTCTCCGGTCAAATTCCTTCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACCTACTCCTTTAACTTCTTCACCGGCGAGCCTCCCGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGGGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCTCCTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCGCCACCATCATCTGGGACACCTTCACCTATAACTCCTTCACCACCATCTCCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCTGGGACACCCTCACCAGTAACTCCTTCGCCTCCATCTCCTGGGACATCTTCACCAGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCTTTAACTCCATCACCACCATCTCCTGGAACACCCTCACCTGTAACTCCTTCGCCTCCATCACCTGGAACACCTTCACCCGTAACTCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCACCTGCCGCACCTTCCCCATTACCTTCACCTACAACACCTTCGCCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCTCCACCACGGCCAGTGGCACCTTCTCCACTACCACCCATTCACACTCCTCCTTCTCCCGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGCTACTTTCCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCACCTTCTCCGGGGACACCTTTACCTACTCCAACGCCACCCAACGGTGTCCACTCTCCGCCGCCACCAAGTTCACCGTCACCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTCTACCTCATCCTTATCCTTATTTATCGCCCCCACCACCTCCTTCTCCTGTTCATGTTCCACCTCCACCACCTTGTACAGCACTTCTTCCACCCCCTCCCCAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCCCCATCCCATCCACCTTATCACCCAACACCATCCCCTTCTCACCCATCACCTTATCACCCGCCACCATCTCCTTCTCACACACCTTATCACCCGCCACCATCCCCTTCTCCCCCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCGCCGCCGCCTCCTTGCGAAACTCCACCAGCAGTTTCTCCCCCGCCACCTGTTGTATACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATCGTTGGACTCCCATACGCATCGCCTCCACCACCACCCTTTTATTGA 2364 0.5486 MKKKQAHSSHLTLLLLLVAVFLGTCANASPVTLTQSRHLLYYRDEFGDRGENVTVDPSLVFENNRLRNAYIALQAWKQAILSDPRNQTTDWVGSDVCSYTGVYCAPALDDPSVRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFQRLLLLFELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPSAVGNAVSLEQLNVAHNLLSGQIPSSICMLPHLLNFTYSFNFFTGEPPACLALPAFDDRINCLPGRPVQRPPAQCQAFLSKPVDCNSFNCKPFVPSPPSPTTPATPSPPSPGTPSPPSSGTPSPITPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSPGTSSPVTPSPPSPGTPSPLTPSPPSPGTPSPVTPSPPSPGTPSPVTPSPLPSPTTPSPPSPAAPSPLPSPTTPSPLPTPPSEPPVVGHSPPRPVAPSPLPPIHTPPSPVYLPPPHSSPAPPGYFPQPPPPSQLPPPSYTPPSPGTPLPTPTPPNGVHSPPPPSSPSPPAPTFSTPPPSHNYGSSPPPLPHPYPYLSPPPPPSPVHVPPPPPCTALLPPPPQSTPSPTPYLPPPSPSHPPYHPTPSPSHPSPYHPPPSPSHTPYHPPPSPSPPPTPPVQYSSPPPPPPCETPPAVSPPPPVVYQNPPPAPVYEGPLPPIVGLPYASPPPPPFY 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00258 787 FunFam Leucine-rich repeat extensin-like protein 5 232 371 - -
Viun3g00258 787 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Viun3g00258 787 MobiDBLite consensus disorder prediction 392 787 - -
Viun3g00258 787 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 523 - -
Viun3g00258 787 PRINTS Proline rich extensin signature 385 406 - -
Viun3g00258 787 PRINTS Proline rich extensin signature 408 424 - -
Viun3g00258 787 PRINTS Proline rich extensin signature 429 446 - -
Viun3g00258 787 PRINTS Proline rich extensin signature 448 473 - -
Viun3g00258 787 SUPERFAMILY L domain-like 71 351 - -
Viun3g00258 787 Gene3D Ribonuclease Inhibitor 69 354 IPR032675 -
Viun3g00258 787 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00258 Viun-Chr3 1450680 1453662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00258 29 394 Leucine-rich Repeat extension Gene Families AT3G24480 75.477 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00258 - - vum:124830001 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00258 3 1450680 1453662 Viun3g00258 3 1450680 1453662 ECH