Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00254 ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACGCCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTATGCATTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTAAAATCAATTTCAATGGCCAAATTTACTGCACTAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAAAGGACCAATGATAAACCTCCAAGAGCCAAGGGTGACAAGGATGATTCCTATGAAAACAAGAGGACAGAGACGTATCAAGGAGGACCTAAAAGCCCTCCTTACGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCGGGATATGATCAAGAAAATAGGCAATATGGTGGTGATTACAAGATAAGTCCTGGTCGTCCTCCTATAATCAATGATTGGCGTCGAGAAGAAAGATTTGGAGATGGACGGAAATATGAAGATAATAAAATATCCGATGGAAATCATAAGTGGGAGGGCCATTCTCCTGATCGAACCAAGGATTCAGGTTCTTCCAGCCCACCCATTGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCGCCCAAAACAAACAAGGGTCTGGCTGCTAACGGCTCAACACTCACGCAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCCATGGAACCCCAGTAGAAGTTAAGCCTGAGACTCTGAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGCTGCTCCAGCAATTCCTCAAGCCCATCAGACTGCTGTGGCTGAACTTGGGATGCCTGCTAATTCTAATAATAACAATTGGGCATCTTTTGATTTTGCTCCTGAGGCAAAAACACCGCATGGTCCTTCAAACGTTAATCCACTTGAATCTATGCTTACTCAATTGACAGGACCAGTATCTTTACCTTCTCAAGTTTCCCAAGCCCAAGGACCTGTGACGGGATCAACTCTATCATCTGCTACTGCTGTTGGAGGTACATTTGCTAGCAGCTTCTCAACATTCCCACCCAGTGATGCTTCTGTAACATCTTCCGGATTGATGACAGCATCAATTCTGAATAATGCTGGACAGTGGTCTAGTTTGCAGTATCAGCAACAGCAACCTTTGTTTGCCGCAGCTGCTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTCGGTGGAGCTTTGAATAATCAGCCCTGGACTATACCCTCGGTACCATCAGTACAAGGGCATCCAAACACATCAATGCCCCATGCGTCGCACCTTGTCCCAAAGTCTGCCAATGAAGCTAAATCCAGTGTTGTTTTACAATCGTCTACAGTAGATATGAAGCCAAGTGGAAGAAGTGAACTTCCGGAGGATCTATTCACAGTTAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCACCTAGCATGGGTATTTCAATTCCATACAATAATGCGGTGCCCATTCCAAGTTTTCCACAAGCATCAAAATCAAAAAATCCATTTGATGTCCATAACGAACCTACTCCAGTTCAAGCCCCAACATTTCCATCCATGTCATCTCTGCAAGGTGCTCTGCCGATACCTTCAGCTACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCCGCCCTCATCGTCATATGTATCAGTGCCGCCTCCTCAAGCACAAACCCTTGCACCCGCAATGGGACCAGGGGCATACATGGGACAACAAATGGCCTCTAACATGCCAATGCAAAGGCATCAAGGATTTGGGAATTTTACTGCTGAGGGAACTGCTTTTGGCTTCTCAAATTCAGATCAGCAGCTGAGTGGTAGTAGGTTGTCAGCTGCTGTTACCCCAAATAACTTCCAGGCAGGAGGAAACCCTTTCGGATGA 2103 0.4498 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCINCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFSGERTNDKPPRAKGDKDDSYENKRTETYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGGDYKISPGRPPIINDWRREERFGDGRKYEDNKISDGNHKWEGHSPDRTKDSGSSSPPIVRPVREILGENVVPLRISEPPKTNKGLAANGSTLTQRTASSSSLASSHGTPVEVKPETLKSLIDFDDDPEPSAAPAIPQAHQTAVAELGMPANSNNNNWASFDFAPEAKTPHGPSNVNPLESMLTQLTGPVSLPSQVSQAQGPVTGSTLSSATAVGGTFASSFSTFPPSDASVTSSGLMTASILNNAGQWSSLQYQQQQPLFAAAASQPSIQQATPPVGGALNNQPWTIPSVPSVQGHPNTSMPHASHLVPKSANEAKSSVVLQSSTVDMKPSGRSELPEDLFTVKYSSFPAPVPGWQMGLPPSMGISIPYNNAVPIPSFPQASKSKNPFDVHNEPTPVQAPTFPSMSSLQGALPIPSATMHSSNMGNPSLAWNPPSSSYVSVPPPQAQTLAPAMGPGAYMGQQMASNMPMQRHQGFGNFTAEGTAFGFSNSDQQLSGSRLSAAVTPNNFQAGGNPFG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00254 700 MobiDBLite consensus disorder prediction 267 291 - -
Viun3g00254 700 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Viun3g00254 700 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Viun3g00254 700 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Viun3g00254 700 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Viun3g00254 700 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Viun3g00254 700 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Viun3g00254 700 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Viun3g00254 700 MobiDBLite consensus disorder prediction 581 604 - -
Viun3g00254 700 MobiDBLite consensus disorder prediction 123 146 - -
Viun3g00254 700 PANTHER ARFGAP/RECO-RELATED 1 700 IPR044820 GO:0005096
Viun3g00254 700 MobiDBLite consensus disorder prediction 123 296 - -
Viun3g00254 700 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Viun3g00254 700 CDD ArfGap_AGFG 12 122 - -
Viun3g00254 700 MobiDBLite consensus disorder prediction 197 232 - -
Viun3g00254 700 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00254 Viun-Chr3 1425722 1433109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00254 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 1.07e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00254 - - pvu:PHAVU_002G314500g 1129.01