Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00252 ATGGCTAGTCGACCGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACGCCGAACCGAAGATGTATTAACTGTAACAGTCTGGGACCACAATATGTGTGCACGAATTTCTGGACGTTTGTATGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTGAAATCAATTTCAATGGCCAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGTGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGACCCACGACGTCATTCTTTTCCTGATAGCAGCCATGTTGATAGGCTCCGGCATTTCATCAAGCATGTTTATATCAATAGAAGATTCAGTGGTGAGAAGACCAATGATAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAAGACAGACATGTATCAGGGTGGACCGAAAAGCCCTCCATATGAGGACCATTACAGTGATAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGATAAGTCCTGGTCGTCCTCCTATACTAAACGACTGGCATCGAGAAGAAAGGTTTGGCGATCGACGAAAATATGATGATCAGAGAATATCTGATGGAAATCATAAGGAAAGCCATTCTCCTGATCATACCAAGGATCCAGATTCTTCCAGCCCTCCTGTGGTCCGACCTGTTAGAGAAATCTTGGGAGAAAATGTAGTACCTCTTCGAATTAGTGAACCACCCAAAACAAACGGTGTACAGGCTGCTAATGGCTCAACATTTGCACAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCGATGTAACCCGGACAGAAGTTAAGCCTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCAGCTGTTACTCCAGCAATTACTCAAGCCCAACAAACTACTGTTGCTGAAGTTGGGATGCTTGCATATTCCAATGATAATAATTGGGCCTCTTTTGATTTTTCTCCTGAGGCAAATGCACCTCAGGGTCCTTCAAACGTAAATCCACTTGAATCTGTGCTGACACAATTGACAGTACCAGTATCTTTACCTTCTCAGGTTTCCCGAGCCCAAGCAGGACCTTTGACGGGATCAACTCTTACTGCTAGCAGCTTCTCAACATTCCCACCTACTAGTGCTTCAGTAACATCTTTTGAAGTGACAGCGACATCAACTTTCAATAATGCAGGACAGTGGGCTAGTTTGCAGTATCAGCAACAACAACCTTTGTTCACTGCTGCTGCAAGTCAACCTTCTATTCTACAAGCCACTCCACCAGTTGGTGCCGCTTTGAATAATCAGCCCTGGACCGTACCATCTGTACCGTCACTACAAGGGCATCCAAGCACATCAATACCCCATGCATCACACCTTGTCCCAAAGCCTGCCAATGAGGCTATGTCCAGTGTTGTTTTACAACCTTCTGCAGTTGAAATGAAACCAAGTGGAAGAAATGAGCTTCCAGAGGATCTCTTCACGGTAAAATATCCATCCTTCCCTGCCCCAGTCCCAGGTTGGCAAACCGGTCTACCACCTAGTATGGGTATCCCAATTCAATACAATAATGCAGTGCCCATGCCAAGTTTTCCACAAGCATCAAAGTCAATAAATCCATTCGACGCCAGTAACGAACCTACTCCAGTTCAAGTCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTCTGCCTAGTGTAACGCCTTCAGCTAAAATCCACCCTTCAAATATGGGTAATCCATCTCTTGCCTGGAATCCGTCATCATCATATGCATTAGTGCCGCCTCCTCAAGCACAAACTATTGCACCCGTAATGGGACCAGGGGCATACATGGGACAACAAATGGTCACTAACATGCCAATGCCAAGGCATCAAGGATTTGGTAGGTTGGCGACTGAGGGAACTGTTACCGCAAACACCTTTCTGGCAGGAGGAAACCCTTTCGGATGA 2019 0.4453 MASRPKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPRRHSFPDSSHVDRLRHFIKHVYINRRFSGEKTNDKPPRVKGDKDDFYENKKTDMYQGGPKSPPYEDHYSDRSSPGGRSPGYDQENRQYGDYKISPGRPPILNDWHREERFGDRRKYDDQRISDGNHKESHSPDHTKDPDSSSPPVVRPVREILGENVVPLRISEPPKTNGVQAANGSTFAQRTASSSSLASSDVTRTEVKPETIKSLIDFDDDPEPAVTPAITQAQQTTVAEVGMLAYSNDNNWASFDFSPEANAPQGPSNVNPLESVLTQLTVPVSLPSQVSRAQAGPLTGSTLTASSFSTFPPTSASVTSFEVTATSTFNNAGQWASLQYQQQQPLFTAAASQPSILQATPPVGAALNNQPWTVPSVPSLQGHPSTSIPHASHLVPKPANEAMSSVVLQPSAVEMKPSGRNELPEDLFTVKYPSFPAPVPGWQTGLPPSMGIPIQYNNAVPMPSFPQASKSINPFDASNEPTPVQVPTFPSMSSLQGALPSVTPSAKIHPSNMGNPSLAWNPSSSYALVPPPQAQTIAPVMGPGAYMGQQMVTNMPMPRHQGFGRLATEGTVTANTFLAGGNPFG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00252 672 MobiDBLite consensus disorder prediction 196 232 - -
Viun3g00252 672 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Viun3g00252 672 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Viun3g00252 672 MobiDBLite consensus disorder prediction 123 241 - -
Viun3g00252 672 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Viun3g00252 672 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Viun3g00252 672 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Viun3g00252 672 MobiDBLite consensus disorder prediction 123 146 - -
Viun3g00252 672 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Viun3g00252 672 PANTHER ARFGAP/RECO-RELATED 1 672 IPR044820 GO:0005096
Viun3g00252 672 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Viun3g00252 672 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Viun3g00252 672 CDD ArfGap_AGFG 12 122 - -
Viun3g00252 672 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00252 Viun-Chr3 1416153 1422937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00252 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 4.43e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00252 - - pvu:PHAVU_002G314500g 1119.76