Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00246 ATGGATTTAGAAGAGAAGTTCCTGACTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAACGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAGCAGTTCCTAAAATGTGGTGTGAAGAAGGAACTTCTTCGAACGTGTTTCGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGGAAAGATGATTAAGAAACAAGACACCAAAAAGGTTTCTAGTTTCAGCCACCAACCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAAAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAGCTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTAGATGGAACCACAAAATTCAAAGACTTGCATCAAATAGTACAAGAGGCGAAGGCTAAGCTAGAGACAGAAGTTGGCCCTGTGAATGGCGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGCAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCCTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGTGAAAATCATTTTAATTGAATTATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCTCCAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAATCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACACGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATTGAGGTAATTAAAAACAACCCCTCACCGGCTGTCCCTATGAATCATGAAAAAGAGAGCCTTCTATCTAGGGGGAATTCTTCGGGATCCAAGATGGTGCCAAATGACGCAATGGGCAACTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAAGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCACACAGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAACGGGAGAAGTATCTGCTGTTGATTCACGCTTAGATATGTGCAGAAAAAGGATAGCAAGCACAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATTACGCATATCTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAGGAACGGAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAGCTGGTAGACTCTTTTTCTGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTATTAAAGCGGGGGCATCAAATTAA 2166 0.4215 MDLEEKFLTKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGVKKELLRTCFDKDKKNISIKSRMTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIPPPDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTTKFKDLHQIVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNANSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICSEEIKGYKLWYYTSRDESPSKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNNPSPAVPMNHEKESLLSRGNSSGSKMVPNDAMGNYGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLHTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRLDMCRKRIASTMEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRQKNGFSIKAGASN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00246 721 MobiDBLite consensus disorder prediction 574 589 - -
Viun3g00246 721 MobiDBLite consensus disorder prediction 11 36 - -
Viun3g00246 721 SUPERFAMILY Fibronectin type III 332 409 IPR036116 GO:0005515
Viun3g00246 721 CDD FN3 357 408 IPR003961 GO:0005515
Viun3g00246 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 716 IPR044514 GO:0010048|GO:0040029
Viun3g00246 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Viun3g00246 721 MobiDBLite consensus disorder prediction 1 36 - -
Viun3g00246 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Viun3g00246 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Viun3g00246 721 MobiDBLite consensus disorder prediction 69 89 - -
Viun3g00246 721 Gene3D Immunoglobulins 313 417 IPR013783 -
Viun3g00246 721 MobiDBLite consensus disorder prediction 69 118 - -
Viun3g00246 721 MobiDBLite consensus disorder prediction 569 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00246 Viun-Chr3 1379591 1388161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00246 124 712 PHD Gene Family AT3G24440 48.764 5.02e-179 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00246 - - gmx:100816128 1327.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00246 3 1379591 1388161 Viun3g00246 3 1379591 1388161 ECH
Viun3g00246 3 1379591 1388161 Viun4g00236 4 1330479 1338953 PCT