Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00223 ATGGTCTTGTTTGGTCCATTTGCATTATTAGCATTCCCCTTTTCCCTGATGATACTTATGTTGCGGCTTAGAATTGAAAACTGTGATATGGAATCTTGGAACGAAGTGGGTGAAGAGAGAAAACTCCGGATTTCATGCAGTGACCCAGATGCTACAGATAGTGAAGAAGAGAGTGAATTAGCAAATGGAGAGAGTAAAAGAAATGGTCGGAAGAGAGTTGTTGTAGAGATGAAGTTTCCAAGCATGGCAGAGAAACGTGCGTCGTCCACCAAGTCTAAAGGCGTAAGACTGAGAGCATGGGGAAAATATTGTGCTGAGATACGAGTCCCTTTTGAAAATCGGCGAGTGTGGCTTGGTACTTTTAATACTCAGAAAGAGGCTTCAATGGCTTACAATAAAAAGAGGCAAGAGTTTGATCACAAAAAGGCTCTTCTCAAAGCTCATGCTTCTTCTCAACCATCTTAA 465 0.4172 MVLFGPFALLAFPFSLMILMLRLRIENCDMESWNEVGEERKLRISCSDPDATDSEEESELANGESKRNGRKRVVVEMKFPSMAEKRASSTKSKGVRLRAWGKYCAEIRVPFENRRVWLGTFNTQKEASMAYNKKRQEFDHKKALLKAHASSQPS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00223 154 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 SUPERFAMILY DNA-binding domain 92 143 IPR016177 GO:0003677
Viun3g00223 154 Pfam AP2 domain 90 137 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 Gene3D AP2/ERF domain 91 146 IPR036955 GO:0003700|GO:0006355
Viun3g00223 154 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 CDD AP2 90 132 IPR001471 GO:0003700|GO:0006355
Viun3g00223 154 MobiDBLite consensus disorder prediction 45 69 - -
Viun3g00223 154 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 40 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00223 Viun-Chr3 1261303 1261767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00223 40 151 AP2-EREBP Transcription Factor Family AT1G68550 38.406 1.99e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g00223 AP2 6.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00223 - - vun:114178173 298.901