Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00220 ATGAGAGACATGAAAGACGCTGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCCGATGATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGTAACCACCGCCACCACCACCACGACGCACGCATGGCACAGTGGGTTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCGCTGGTTCCGGAGCTGGGAGGGGAAGAACAAGAACCTGTGGTTGCGGATAATGAGGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTACGATGTGAGAACGGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAGGTAAGTGCGCGTGTGGGAGGGGGAGTTGAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATGTTGATGGTGATGTAGCGTGTTACCTGGAGTCAGTTTTTGACATGACGAACGATGATGTCTTTCATTGGAATAGCATTGAGTCTGTGCTGTCAGATGCACGGGAAGAGAAGGAGTGTGTGGTGGCGAGTGATGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTAAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGATGGGGAAATAAGAGGCTTAAGGGGTGACCTAGATGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTGAGAAAGTTGAACGCAGAGAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACGTGCTTTGTTGGGGCCAATGCTTTTCCTGCTTACCAATGA 1119 0.4888 MRDMKDAGALGAKTARACDSCISRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTATTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPELGGEEQEPVVADNEETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLDKEDDEVSARVGGGVEGAMAKVKDEEDVDGDVACYLESVFDMTNDDVFHWNSIESVLSDAREEKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGYDFCLGLSGVDGEIRGLRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00220 372 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Viun3g00220 372 CDD Bbox1_BBX-like 17 60 - -
Viun3g00220 372 SMART bboxneu5 13 60 IPR000315 GO:0008270
Viun3g00220 372 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Viun3g00220 372 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 360 - -
Viun3g00220 372 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515
Viun3g00220 372 Pfam CCT motif 317 359 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00220 Viun-Chr3 1253607 1255200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00220 7 359 C2C2-CO-like Transcription Factor Family AT1G25440 44.028 9.50e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun3g00220 zf-B_box 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00220 - - vun:114176987 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00220 3 1253607 1255200 Viun4g00282 4 1651976 1654828 PCT