Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00215 ATGGAAGAAAAGCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATAACATATTATTTATTAAGGAAAGTGTCTGATGTTAGCTTCACATCCAAGGTTGTCGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCCTGAAAGATCGGAAATATCCAACGGGGCTTCGAACGAACCGAGCCACAGAATCAGGGTATTGGAAAACCACCGGAAAAGATAAGGAGATATTTGGTGGTGGAGTTCTGATAGGGATGAAGAAAACTCTGGTGTTTTACATGGGTAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGTTATGCATGAATATAGACTTCAAAACAAGCAACCCTATAGATCTTCTAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAGCTCAGCACCAAAGAAACCACAGCAGACATCATCTTCTCAACCATCTGAAGATTCAATGGTGAATGAATTTGGTGATGCAGACCTACCAAATCTGAATAGCATTGCAAATTCATCAAGTGTTGCAGCACAAATTTACAACAGTGGTGATCCCAGCAATGTGAGCACAAACATGAACTTGGCCATGAATTGGCCTTCTGCAACTGAGCTTCCATCTCTTCCATGGCCTTCTGGGTTGTTGCTGAATCCAAACCTTTCTGTGAATTCATTGCTTCTCAGGGCATTGCAGCTTAGGAATAGGAATTCTTATCAACAGAGAGAAGCTGCAACCAGTGATCACTTTGCAACCTACGTTCCTCAAACATTTCCTCACAATAATATTGGAACTCATAATGATAATCTCACTCCAAATCTCAGTGTCTCAGCTTCTTCCACAGCTTTAGAACTGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 936 0.4263 MEEKLPPGFRFHPTDEELITYYLLRKVSDVSFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKQPYRSSKEEWVICRVFQKSSAPKKPQQTSSSQPSEDSMVNEFGDADLPNLNSIANSSSVAAQIYNSGDPSNVSTNMNLAMNWPSATELPSLPWPSGLLLNPNLSVNSLLLRALQLRNRNSYQQREAATSDHFATYVPQTFPHNNIGTHNDNLTPNLSVSASSTALELQEQPFNMDSIW 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00215 311 MobiDBLite consensus disorder prediction 154 173 - -
Viun3g00215 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 217 - -
Viun3g00215 311 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Viun3g00215 311 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Viun3g00215 311 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Viun3g00215 311 FunFam NAC domain-containing protein 100-like 14 155 - -
Viun3g00215 311 MobiDBLite consensus disorder prediction 154 171 - -
Viun3g00215 311 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00215 Viun-Chr3 1224105 1226855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00215 1 311 NAC Transcription Factor Family AT3G18400 55.623 1.03e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g00215 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00215 - - gmx:100775645 457.218