Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00210 ATGGCAGATTTTCAAAGCTTCAGACCCTCTTTTCCTTTCTTGGATATCGATAACATGGAAATTCATAACTTGGTGCCGTTTGACAGCTTATTGGGCTCTACAGAACCTGAATTTCCAGGAAACTTGGAAGAGAATTTTTCGGGTCTTTTCGATCACAATGCAGTTCCAGCGTTAAACGAAGTTCATGAAGGTAAAAAGAGGGAAGCAACTGATATGTGTGATCCCAGTTCCGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAAGACAAAAAATAGTTGTGGAAGAGTCAAGAGAGTGAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTTAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACGATGGGTATGGCAATAATGTTGGACGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCTTGTCCATGAAGCTTAGTGCAGCAAGTGGCTATTACGACTTCAATTCAGAGTCAGATACTTTAGAAACAATGCAGAGAGCAAAGGTATCCGAGGCGAAAGAGATAAGCGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTCACTGTAA 690 0.4174 MADFQSFRPSFPFLDIDNMEIHNLVPFDSLLGSTEPEFPGNLEENFSGLFDHNAVPALNEVHEGKKREATDMCDPSSGNSTPDISESGSKTKNSCGRVKRVKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASGYYDFNSESDTLETMQRAKVSEAKEISEGVSCFEATWPWSL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00210 229 MobiDBLite consensus disorder prediction 73 94 - -
Viun3g00210 229 Gene3D - 123 185 IPR036638 GO:0046983
Viun3g00210 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 189 IPR036638 GO:0046983
Viun3g00210 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983
Viun3g00210 229 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 200 IPR024097 GO:0006355
Viun3g00210 229 SMART finulus 129 179 IPR011598 GO:0046983
Viun3g00210 229 MobiDBLite consensus disorder prediction 65 103 - -
Viun3g00210 229 CDD bHLH_AtBPE_like 114 198 - -
Viun3g00210 229 Pfam Helix-loop-helix DNA-binding domain 127 174 IPR011598 GO:0046983
Viun3g00210 229 FunFam transcription factor BEE 3-like 120 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00210 Viun-Chr3 1184499 1186114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00210 4 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.796 4.59e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g00210 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00210 - - vun:114179606 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00210 3 1184499 1186114 Viun3g00210 3 1184499 1186114 ECH