Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00193 ATGTTCATCAGAATTACATTTGTTTGCTTTCTTTCTACGTTGTTTCTCTTCTTCACCAATACCTCTGCCATTCACAACACATCATTCGCACCAACTTGCCTTACCCAACGCTGCACAAATGGACCTAACATCAGCTACCCTTTTTGGCTTTCTCGTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGAGGCACCGCCACTTTTTCTCACATAGGATTATACTACACGGTACGAGATATAGACTATGAGAACCACACGCTTAAGCTGCTGGATCCTGACACTTTCAACCAAACCTGTCCAAAGGCAAAACACGGTGTTCCCATAGGCAACCTACCGCTCACTCACTCCCCCTCCAACTTAAACCTTAGCTTTTACTACAACTGCAGTAGCTACCCTTCTGGTGTGCCTTCTATTCAGTGTCTCAGTTCTGGGGCAAACAAGTCTTTTGTGTTTGTGACGGGGAACGAGACCACAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTGACAGTGATGAAGGATGCGATTACAAGTGATGGTGACTTGATAAACCAGTTTCCCAGTGCCATGGATGGAGGGTTTGTTCTTGAATGGCACACTGCTTCGTATTGCGCTCAGTGCGAGGCTAGTGATGGAATCTGCGGCTACAGTAACCCCGAGAAGCAGGTGCTGTGCTTCTGCAAAGATGGAAGTACAAAAAACACTACTTGTTATGGGGGAAGCAGCACCGGTTTGTCAAGATTAATTATAGGTTTAATTATAGCAGGAGGAATTGGTGCACTGCTGACATGCGTCGTAACTTACATTTTTGGACGAAAGTTGTCACCAATTTTGTCAGACATTCGGCAGGCCAGAAAGATTGATCGAGACATTGAGGCCTTCATCAGAAATAATGGACCACTTCCCATAAAGAGGTATTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTCAAGTATATAAGGGAAATCTATGCAACAAATCTGCAGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGTAGAACATCCCATGTAAATATCGTTAATCTCCTTGGTTTCTGTCTTGAAGGCGAGAAGAAGGCTATTATATACGATTTTATGCCAAATGGATCACTTGAAAAGTATATTCACAGCAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCTGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCCAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAGACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGATACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGTGGGGTTTCGTACAAATCTGATGTTTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGAAAGCAAAATATCGGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTAGCATGGCTTGAAGGTATGACCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGACTGTGGTGTATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGAACAATTGCAAATTCCACCTGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACCAGTAGTAGTGATTGA 1890 0.427 MFIRITFVCFLSTLFLFFTNTSAIHNTSFAPTCLTQRCTNGPNISYPFWLSRTDQLCGYHELGLLCSGGTATFSHIGLYYTVRDIDYENHTLKLLDPDTFNQTCPKAKHGVPIGNLPLTHSPSNLNLSFYYNCSSYPSGVPSIQCLSSGANKSFVFVTGNETTGFDWSGNCEEKIVVTVMKDAITSDGDLINQFPSAMDGGFVLEWHTASYCAQCEASDGICGYSNPEKQVLCFCKDGSTKNTTCYGGSSTGLSRLIIGLIIAGGIGALLTCVVTYIFGRKLSPILSDIRQARKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNYFESKLGQGGYGQVYKGNLCNKSAVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGEKKAIIYDFMPNGSLEKYIHSKNLETDPPLSWQRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSDTQSIISMYGARGTVGYIAPEVWNRSFGGVSYKSDVYSYGMMILEMVGGKQNIGIEASHSSETYFPHWIYKHVEVGKNLAWLEGMTPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSTEQLQIPPEPFIFSPMKTEVDICTTSSSD 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00193 629 SMART serkin_6 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00193 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Viun3g00193 629 SUPERFAMILY Protein kinase-like (PK-like) 305 598 IPR011009 -
Viun3g00193 629 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Viun3g00193 629 Pfam Protein tyrosine and serine/threonine kinase 326 597 IPR001245 GO:0004672|GO:0006468
Viun3g00193 629 FunFam PR5-like receptor kinase 399 609 - -
Viun3g00193 629 Gene3D Phosphorylase Kinase; domain 1 290 398 - -
Viun3g00193 629 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 615 IPR045874 GO:0004672
Viun3g00193 629 ProSiteProfiles Protein kinase domain profile. 324 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00193 629 Gene3D Transferase(Phosphotransferase) domain 1 399 607 - -
Viun3g00193 629 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Viun3g00193 629 Pfam Wall-associated receptor kinase C-terminal 145 238 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00193 Viun-Chr3 1071879 1074800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00193 35 612 Receptor kinase-like Gene Family AT5G38260 41.128 3.14e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun3g00193 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00193 - - gmx:100781977 939.102