Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00192 ATGACCACCACTTCCTCCTTCCTTGCATCCATACTCGCCCTTGCTTTCTTCTTAGCAACTTTGCCACAATCCTACTCTCAACAAAACAACACCTACTCCATTTGCAGCCAATCTTTCAGCTGTGGAACTCTCACAAACGTATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGCCGCAATGGCTTCAAGCTCACGTGCATGGATAACCAAAACACTTCGCTTCAAGTTGGTTCCATGAACTTCCATGTACTACACATCAACCAAACGGCTTCCACCATGAGAATGGTGCGAACAGACCTTGTCTATGATCGCTGCTCTTCCAATTTCACCAACACTTCTCTCAGTTCCACTCCCTTTTCTTTCTTACGCACCGTCCAGAATGTTTCTGTATTCTACGATTGCCCCTCTCAGGATTCTGTTGGGGGAAACTCCTTTACGTGTCAGAATGATACTAATAACCACGCTTTCTACGCGGTCAATGGTACTCAGCTGAGGCAGTTCCCGGGCCTTCAGAGCTGCGGGGTTAGCGTTCTGGTGCAAGTTTCAGAGGGTGTTGTTTGGGATTCAGGGAACGGGATTGAGCCGCTGAAGGAAGCGTTGGATCAAGGGTTTGATGTGAAGTTTGATGCAGAGTGGAGTTCTCAGTGCACAGCGTGCAGGGATTCTGGAGGAGCATGTGGAACGAAAGAGAATGATTCCGATCAGTTTTCTTGTTATTGCTCCGGTGGAACTCATGGCTCAGTGTGCTCTACTCACGATAGTGGCAGGAAGAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGGAACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGCAACAAAGCTAGAATTTGGAAATTTATATTAATACAATTGGGCAAGATAAAAAAGAATGATCGAGTTATAGAAGCCTTCCTCGAAAGCCAAGGTTCTATGGGTATAAAGAGATACAGTTTCTCTGAAGTTAAGAAAATGACCAACTCCTTCAAAATTAAACTGGGGGAAGGTGGTTATGGATCTGTGTACAAAGGAAAGTTACTCAATGGTTGTTCGGTGGCAGTGAAGATACTGAACGAATCAAAGGAGAACGGCGAAGAGTTTATCAACGAGGTTGCTAGCATAAGCAAAACATCCCATGTTAACATCGTCTCTCTCCTTGGATTCTGTCTAGAAGGAAGCAGAAAAGCCCTGGTGTACGAGTTTATGTCGAATGGTTCACTTGAGAAGTACATCCACAAGAAAGCAGCAGCAGAAAAAAACAAAACCACTACTCCACCCTTGGGTTGGGACAGATTGAACAAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCACAAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAGCCACATAACATTCTTTTGGACGAAACTTATCGGCCAAAGATATCAGATTTCGGACTTGCGAAGCTGAGCACGAGAGATGAAAGCATTATATCAATGTCAAATGCTAGAGGAACAATAGGGTATGTGGCTCCTGAAGTGTTCAATAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTACTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCTAGTCGCTCGAGCGAACTATATTTCCCACATTTGGTTATTTATAAGAAGCTTGAGCAGGGTACTGATTTGGGAGTTGAAGGGATATTGTCTGGTGAGGAGAATGAGATAGCAAAGAGAATGACAATGGTGGCTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCAACCATAAGTAGAGTGATTGATATGTTGTTAGGTAGTGTGGATTCCATGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCACGATCAACAGAGTTTTCCACTGCAGTATCCGAATCATTTGATAGTGTCTCGTGCAGCTCATAG 1959 0.4431 MTTTSSFLASILALAFFLATLPQSYSQQNNTYSICSQSFSCGTLTNVSYPFWGGNRPQFCGRNGFKLTCMDNQNTSLQVGSMNFHVLHINQTASTMRMVRTDLVYDRCSSNFTNTSLSSTPFSFLRTVQNVSVFYDCPSQDSVGGNSFTCQNDTNNHAFYAVNGTQLRQFPGLQSCGVSVLVQVSEGVVWDSGNGIEPLKEALDQGFDVKFDAEWSSQCTACRDSGGACGTKENDSDQFSCYCSGGTHGSVCSTHDSGRKSRVLKLVLGFVGTGFALPLIAVIICRNKARIWKFILIQLGKIKKNDRVIEAFLESQGSMGIKRYSFSEVKKMTNSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLEGSRKALVYEFMSNGSLEKYIHKKAAAEKNKTTTPPLGWDRLNKIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTRDESIISMSNARGTIGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGTDLGVEGILSGEENEIAKRMTMVALWCIQTIPSHRPTISRVIDMLLGSVDSMEMPPKPFLSSPPRSTEFSTAVSESFDSVSCSS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00192 652 Gene3D Transferase(Phosphotransferase) domain 1 409 622 - -
Viun3g00192 652 Pfam Wall-associated receptor kinase C-terminal 151 245 IPR032872 -
Viun3g00192 652 ProSiteProfiles Protein kinase domain profile. 334 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00192 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 306 633 IPR045874 GO:0004672
Viun3g00192 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Viun3g00192 652 Gene3D Phosphorylase Kinase; domain 1 310 408 - -
Viun3g00192 652 Pfam Protein kinase domain 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00192 652 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Viun3g00192 652 SMART serkin_6 334 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00192 652 Pfam Wall-associated receptor kinase galacturonan-binding 35 100 IPR025287 GO:0030247
Viun3g00192 652 SUPERFAMILY Protein kinase-like (PK-like) 313 613 IPR011009 -
Viun3g00192 652 FunFam serine/threonine-protein kinase PBS1-like 303 408 - -
Viun3g00192 652 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
Viun3g00192 652 FunFam PR5-like receptor kinase 409 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00192 Viun-Chr3 1067804 1071616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00192 1 626 Receptor kinase-like Gene Family AT5G38260 40.250 2.69e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun3g00192 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00192 - - vra:106766588 1186.4