Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00183 ATGGAAAACCTCTTTTTCAACTGTTTCATTGGATACTGTCTTCTTTATTCTCTCTTGCTTGTGCATGGCAAACCATTGTCATGCAATGAAACACCTTACCCCTCTGTGTGCAAACATTACGTTGAAACCACCAACACACTATCAACCCTAGATGCTAGATCCTCTTCCTTCCACGACCTGGCCCTTAAGGTCACCGTGGATCAAGCCATGCAGGTTTATAAACTTGTCTCAAACATGGACCTCAATAATTTCAAGGACAAGCGATCCAAGTCTGCTTGGGAGGATTGTTTGGAACTCTATGAGGACACACTTTATCAGCTCAAACGCTCAGTGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAGAGTGCATCCATTGCCAATCATCAAACATGCCAAAATGGTTTCACCGAATTTAACCTTCCCACTCACCTCAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTAAGCAATTCCCTGTCCCTTAGCAAGGCTATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGAAAGTTGCTTTCAGATGGCTTCCCTTCATGGATCTCACATTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGCACTGGGAACTATAAGACCATCTCAGAGGGTGTTGCTGCAGCTGCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAGTATTGATATCAAGAGAACTGTGAAAAACCTGATGATCATCGGAGATGGTATGGGTGCTACTATTGTTACTGGTAGTGACAACGCGCAAGATGGTTCCACTACATTCCGTTCTGCTACTTTTGCTGTTTCTGGAGATGGCTTCATTGCTCGGGACATGACCTTCGAGAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCCGACCACTCGGTGTTTTATCGGTGCAGCTTTAAGGGGTATCAAGACACCTTATACGTCTACGCCAACCGCCAATTCTACCGCGACTGTGACATATACGGAACCGTAGACTTCATTTTCGGGGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGAAAACCGATGGGGAACCAGCAGAACACGGTGACGGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATCATCCATAACTGTCTCATAACTGCAGCTGGGGACCTGAAAGCGGTGCAGGGCTCTTTTAGAACTTATCTTGGTCGCCCATGGCAAAAGTACTCAAGGACTGTCATCATGAAGACTGCCCTTGATGGCCTGATTAACCCCGCAGGTTGGTCTGAGTGGAGTGGAAACTTTGCACTGGGAACTCTATATTACGGTGAACATGCGAACACAGGAGCAGGTGCTGGCACCGGAGGGAGGGTGAAATGGGGAGGCTTTCGCGTGATCTCCAGCGCCGAGGCTGTAAAGTTCACCGTCGGAGAATTCTTAGCCGGTGGGTCGTGGATTCCTGGGAGTGGCGTGCCCTTTGACGCAGGTTTATGA 1569 0.4844 MENLFFNCFIGYCLLYSLLLVHGKPLSCNETPYPSVCKHYVETTNTLSTLDARSSSFHDLALKVTVDQAMQVYKLVSNMDLNNFKDKRSKSAWEDCLELYEDTLYQLKRSVNSNNLNDRLTWQSASIANHQTCQNGFTEFNLPTHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISHSDRRLLQETTSKADVVVAQDGTGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKESIDIKRTVKNLMIIGDGMGATIVTGSDNAQDGSTTFRSATFAVSGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTVDFIFGDAVSVLQNCNIYVRKPMGNQQNTVTAQGRTDPNENTGIIIHNCLITAAGDLKAVQGSFRTYLGRPWQKYSRTVIMKTALDGLINPAGWSEWSGNFALGTLYYGEHANTGAGAGTGGRVKWGGFRVISSAEAVKFTVGEFLAGGSWIPGSGVPFDAGL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00183 522 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Viun3g00183 522 SMART PMEI_2 16 166 IPR006501 GO:0004857
Viun3g00183 522 Gene3D - 205 522 IPR012334 -
Viun3g00183 522 FunFam Pectinesterase 25 170 - -
Viun3g00183 522 PANTHER PECTINESTERASE 25 512 - -
Viun3g00183 522 CDD PMEI-like_3 26 143 - -
Viun3g00183 522 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Viun3g00183 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Viun3g00183 522 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Viun3g00183 522 SUPERFAMILY Pectin lyase-like 206 521 IPR011050 -
Viun3g00183 522 Pfam Pectinesterase 211 507 IPR000070 GO:0030599|GO:0042545
Viun3g00183 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Viun3g00183 522 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Viun3g00183 522 FunFam Pectinesterase 205 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00183 Viun-Chr3 1015352 1019333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00183 2 522 Carbohydrate Esterase AT1G23200 51.264 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00183 - - gmx:100775898 919.457