Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00171 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACCCACTGCGGTGAAGGAGGAGATCAACGATGATGGCTACGAAGACTCTTCTGGCTTCACAAAGGGTTCCATTGCACAGTGGTCTTTCTCGAACAAAGTATCCTCCATTCCAAATTTGATGTCTTTCAAGGCTTCTCAGGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAATCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGAATCCCAGAAATCTTTCAATCGCGATGGGCAAGGTGGTCCTCATTTTTCGCTGACTCCATTTCCAGTACAACATGATGCGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATGGCACTAGTGCGAAGCAGCCATTACTTGGGGGAATACCTGTTTCTGTGCCTCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGTTGAATCATGTAACAGTGTGAAACCATCTCCGCCTTCTGCCCAACTTACCATCTTCTATGGGGGAACTGTAAAAGTGTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGAAGTAGCGTAGCTATAGCTCCTAGCATGGTCCAGCCAAAAGTTCACGCGCCGGTGCCGGTCTCGGTCTCGAAGTTGGCTGCTGCCGGCGACGGTGTGGCTGCAACTCAACCTGCAAATACGCCACCCGGCTCTGGCATTTCAAGCCCTATATCTGTTTCTTCACATAGTGGAGCACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCCATCACTCCTGTTAGCATTGTGGAGCCTCCAAAGATAGTCACTGCAACCACTATGTTGGCATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTAGGTTTTTAGAAAAGCGCAAAGAAAGGGTGATGAGTGCAGCACCATACAACCTGAACAGGAAGTCTGAAGAGTGTGCACCTGCATAA 1119 0.4692 MERDFMGLNSKEPPTAVKEEINDDGYEDSSGFTKGSIAQWSFSNKVSSIPNLMSFKASQDDKTKKMLSGPITAGLLSILNQDAIESSHKRSAGESQKSFNRDGQGGPHFSLTPFPVQHDANSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATGGQNMNGTSAKQPLLGGIPVSVPHLVIPNAGAVAGMVESCNSVKPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVAIAPSMVQPKVHAPVPVSVSKLAAAGDGVAATQPANTPPGSGISSPISVSSHSGAQSGSGSTSTDEFLAAKTTGVPITPVSIVEPPKIVTATTMLASAVPQARKASLARFLEKRKERVMSAAPYNLNRKSEECAPA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00171 372 MobiDBLite consensus disorder prediction 270 301 - -
Viun3g00171 372 Pfam Jas motif 336 360 IPR018467 -
Viun3g00171 372 Pfam tify domain 200 233 IPR010399 -
Viun3g00171 372 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 366 IPR040390 -
Viun3g00171 372 MobiDBLite consensus disorder prediction 266 301 - -
Viun3g00171 372 ProSiteProfiles Tify domain profile. 199 234 IPR010399 -
Viun3g00171 372 SMART tify_2 199 234 IPR010399 -
Viun3g00171 372 MobiDBLite consensus disorder prediction 86 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00171 Viun-Chr3 913910 917091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00171 40 369 Tify Gene Family AT3G17860 35.072 5.41e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun3g00171 tify 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00171 K13464 - gmx:100787821 480.33