Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00169 ATGGGCGACATGAAAGACAAGGTTAAAGGGTTCATGAAGAAAGTGAACAACCAATTCTCCTCTTCATCATCTGGAAAATTCAAAGGCCAAGGAAGAGTCCTCGGTTCTTCTTCTACACCCGCCGATTCAAATCCTACCTCTCGCCCCATTCCTTCGCTCAACCCTAATTCCAAACCTTCCTCACCCAATCCCAAACCCACTTCACCCAATCCCAAACCCATTTCACCCAATCCCAAACCCTCGCCCCAGAATACGGAGCCCAGTAGAAGCACCGAGAAGCCTCGCAAAGATGGTGATGGGTTTGACCCGTTTGATTCTTTGGTCACTAATTCCAACAGATCGAAAAACGGGTATTCACTGAACGTGTTTGAATGTCCCGTTTGTAAACAACCTTTCGGGTCCGAAGAAGCTGTGTCTGAACACGTGGATGATTGTTTGAGTAACCTTGTTCAGCGTGAGCCTATAGGTGATGATGGAAACGGGGTTTCAGAGAGTGAGATTGGGTCTAACACTGATGGTGAATTGGAGGTTTGTGTTGGGACTTACATTTCAGGGAATCCATCTGAGGGATCGGTTGATATTATTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTGAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATAAAAGAGGCTGTTGGTGACGTTGCAGGGGGAGTTGAGTTGCTCAGTTTTCTGGGGTTTGAACTCAGGGAGGAGAATGAAGAGACATGGGCAGTGATGGAGGTTCCCACAGAGGAGCAAATAAAATTCATCAAGAAGGCAATTACGTTACTGGAATCACAACTTGTGCAGCAAGCACCTCCAAAGAGAGAGGATTCAGCGTCTGCAAATTCTGCGCAGACGAGTGTGAAGGTTGAGCGAAAGCCAGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTTCCTGAAAGTGTTGCAGCTAAAATTGTGCTACCAGATTCCTTCTATAGCCTTTCATCTGAAGAGGTGAGAAGAGAAGCTGAGTTAAGGAGAAAAAAGATTGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAGAGAAAAACAAGCAAAAGCTTCCAGGAAGAGATACACAAAAACTATTATCAGAGTTCAATTTCCCGATGGAGTTGTACTTCAAGCTGTATTTGCTCCATGGGAAGCAACCACTGCTCTCTACGAGTTTGTCAGCTCAGCACTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCACCCTGTAGTTGTCCAACGGCGTGTGATCCCTCATTTTCCAAAAGCAGGGGAAAATCCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCAGCTCTAATTAAGTTCAAGCCATTGGAAACAGATTCTGTTGTTTTCACAGGTCTCAAAAACGAATTGCTTGAAATCAGTGAGCCACTTGTTAATAGTTAA 1437 0.4461 MGDMKDKVKGFMKKVNNQFSSSSSGKFKGQGRVLGSSSTPADSNPTSRPIPSLNPNSKPSSPNPKPTSPNPKPISPNPKPSPQNTEPSRSTEKPRKDGDGFDPFDSLVTNSNRSKNGYSLNVFECPVCKQPFGSEEAVSEHVDDCLSNLVQREPIGDDGNGVSESEIGSNTDGELEVCVGTYISGNPSEGSVDIILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFLGFELREENEETWAVMEVPTEEQIKFIKKAITLLESQLVQQAPPKREDSASANSAQTSVKVERKPVDRQVKVFFAVPESVAAKIVLPDSFYSLSSEEVRREAELRRKKIADSQLLIPKSLREKQAKASRKRYTKTIIRVQFPDGVVLQAVFAPWEATTALYEFVSSALKEPGLEFELMHPVVVQRRVIPHFPKAGENPKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00169 478 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Viun3g00169 478 Gene3D - 361 454 - -
Viun3g00169 478 ProSiteProfiles UBX domain profile. 367 451 IPR001012 GO:0005515
Viun3g00169 478 Pfam PUB domain 189 263 IPR018997 -
Viun3g00169 478 Gene3D Classic Zinc Finger 119 148 - -
Viun3g00169 478 Gene3D - 184 273 - -
Viun3g00169 478 SUPERFAMILY Ubiquitin-like 338 451 IPR029071 -
Viun3g00169 478 MobiDBLite consensus disorder prediction 1 115 - -
Viun3g00169 478 Pfam UBX domain 368 418 IPR001012 GO:0005515
Viun3g00169 478 MobiDBLite consensus disorder prediction 14 54 - -
Viun3g00169 478 SMART PGNneu 190 257 - -
Viun3g00169 478 CDD PUB 188 273 - -
Viun3g00169 478 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 477 - -
Viun3g00169 478 FunFam UBX domain-containing protein 6 361 452 - -
Viun3g00169 478 MobiDBLite consensus disorder prediction 55 83 - -
Viun3g00169 478 SUPERFAMILY PUG domain-like 187 272 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00169 Viun-Chr3 904577 909057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00169 1 399 C2H2 Transcription Factor Family AT2G01650 55.446 8.96e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00169 K14011 - gmx:100779271 719.153