Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00161 ATGGCGAGACCACACAGTACGTACCCCATCTCATGCAGGAAAAAGTGGCGAATGGCTTTCACTGTCATTTCCTTCGTCAAGGCCCTTCACCATCTCTCCAAGAAAGCTCTTCATATGAAACCCCAAACCCTCTTCCGTTCCTTCTCCTACCTCGCCATTGACGTTGCTCCCCCACACGTGCCTTCTCCACGTCACAAACTTTCCATTGCTGATCCCAAACTACTCAGTCACATGGTAGGGGACAAGAGACTCGACTCTCTCACCCAATTTGGAGACATCAAAGAACTCGCTGCACTTCTTGAAACCGATCTCAAGCGTGGCATAAGCGACGACGACAACGATGACATTGATCGCCGAAAACGCGTTTTCGGTGTCAACGTGTTCACGAGGCCTCCATCCAAAGGTTTTCTTTCCTTTGTTCTTGAAGCTTTCAAGGATACCACTATCATCATCCTTTTGTTTTGTGCTGTTCTTTCCCTTGGCTTTGGAATCAAGCAGCATGGGTGGAAGGAGGGGTGGTACGACGGAGGAAGCATCATATTGGCGGTTATTCTCGTTATCGTCGTGTCTTCCGTGAGTAACTTCAACCAATCTAGACAGTTCAAGAAGCTTTCTGCCAAGAGTGGCAACATAGGAGTTGAAGTGGTACGAGGTGGTCGGCGCCAGAGCGTGTCGATCTCGGAGGTGGTGGTGGGTGACATTGTGCAGTTGAAGATTGGCGATCAGGTTCCGGCGGATGGGTTGTTTCTAGAGGGACACTCGTTGAAGGTGGACGAATCCAGCATGTCGGGGGAGAGTGATCACGTGAATGTGAACGCTGACACAAACCCTTTCTTGTTATCTGGCACAAAGGTCGCCGAAGGTTTTGCACGCATGCTTGTAACTTCTGTGGGCATGAACACCGCATGGGGTGTGATGATGGGTTCGATCACGAGAGAGCTCGATGAGGAGACACCTTTGCAAGTGCGTCTCCAGAAATTGACTTCGGCTATTGGCAAGGTTGGGTTGTTTGTGGCTGCACTTGTTTTGGTAGTGTCTATGATAAGATACTTCATGGGGAGTACCAGAGATGATTTTGGGAACCGGGAATTTGTCGGGAGAAAGACAAAGTTTGATGATGTCATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACGATTGTGGTGGTGGCCATTCCAGAAGGGTTGCCACTGGCTGTTACTCTGACTTTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCGGCAACAACGATCTGCACTGATAAAACTGGTACTCTTACAATGAATGAGATGAAGGTGAGTGAGGTTTGGGTGGGAAAAAAGCTAATAGCAGAAGGTGGGTATTTGGCGCCGAGTTTAGTCCAGTTATTGAAGGAAGGAATTGGGCTGAATACCACTGGAAGTGTTTACCAACCCCAAGAAATTTCTCTGCCTGAAATCTCAGGTAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGATGGATTTGGGGATGGACATTGATGAAGTGAAGCAGCATTGCGAGATAATTCACGTGGAGACGTTTAACTCTGAGAAGAAGAGAAGTGGGGTTCTGATAAGGGAGAAGAGAGGAAGCAACAGGGTGCATACACACTGGAAAGGTGCTGCTGAGATGATATTGGCAATGTGTTCAAATTACCATGACAACACAGGGGAAATCATGATCATGGGTGATGAAGAACGAGCACAAATTGGGAACATTGTGAAGAACATGGCTACAAAGAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGTTCCAACGAGAAGGTCTGTGAAAAGCTTGAAGAGACAGAACTAACACTGTTGGGAATACTTGGATTGAAAGACCCTTGTAGGCCTGGAGTGGAAGCAGCAGTTGAATCATGCAAAAATGCTGGAGTGAAGATCAAGATGATCACGGGAGATAATGTGCACACAGCGAAGGCCATAGCTTCTGAATGCGGGATTCTTAATCCTAGTGAAGAATTGGATGAAGATGCTGTGGTTGAAGGGTTTCAATTCAGAAATTACTCGCATGAGGAGAGAATGGATAAGATTGAGAGAATCAGGGTGATGGCGAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTCACGTGGTGGCAGTCACAGGTGATGGTACAAACGATGCACCTGCTCTGAAGGAAGCTGATATTGGACTTTCCATGGGAATACAAGGCACAGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGATGACAATTTCTCTTCTGTGGTGACAGTACTACGTTGGGGAAGATGTGTGTACATAAACATTCAGAGGTTCATTCAGTTTCAGCTCACAGTTAACATTGCAGCACTTGTCATAAACTTTGTAGCTGCAGTTTCTTCTGGTAAAGTGCCTCTAACTGCTGTTCAGCTTTTGTGGGTTAACCTGATCATGGATACTCTTGGAGCCTTGGCTTTAGCCACTGAGGAACCCACCAATGATCTCATGAAGATGCCACCTGTGGGGAGAGTTGAGCCACTTATAACTAGAGCTATGTGGAGGAACCTCATTTCACAGGCATCATATCAAGTGTTTGTGTTACTGATTTTGCAGTTCAAGGGAAGATCAATCTTTGATGTGAGTGAGAAGGTGAAGAACACTCTTATTTTCAATATTTTTGTTCTCTGCCAGGTTTTCAATGAGTTCAATGCAAGGAAGGTGGAGAAAAAGAACATCTTTGAGGGGCTTGGTAAAAACAAGTTGTTCATAGTGATTGTGGGTTTCACTGTTGTTCTTCAGGTAGTGTTGGTTGAGTTTCTGAAGATGTTTGCGGGCACTGAGAGATTGAGTTGGGGCCAATGGGGTGTTTGTGTTGCCATTGGAGCTTTGTCTTGGCCAATTGGCCTGCTTGTGAAGTGTATCCCTGGCCGTCCCAGCAAGTAG 2988 0.4645 MARPHSTYPISCRKKWRMAFTVISFVKALHHLSKKALHMKPQTLFRSFSYLAIDVAPPHVPSPRHKLSIADPKLLSHMVGDKRLDSLTQFGDIKELAALLETDLKRGISDDDNDDIDRRKRVFGVNVFTRPPSKGFLSFVLEAFKDTTIIILLFCAVLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFKKLSAKSGNIGVEVVRGGRRQSVSISEVVVGDIVQLKIGDQVPADGLFLEGHSLKVDESSMSGESDHVNVNADTNPFLLSGTKVAEGFARMLVTSVGMNTAWGVMMGSITRELDEETPLQVRLQKLTSAIGKVGLFVAALVLVVSMIRYFMGSTRDDFGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMKVSEVWVGKKLIAEGGYLAPSLVQLLKEGIGLNTTGSVYQPQEISLPEISGSPTEKALLSWAVMDLGMDIDEVKQHCEIIHVETFNSEKKRSGVLIREKRGSNRVHTHWKGAAEMILAMCSNYHDNTGEIMIMGDEERAQIGNIVKNMATKSLRCIAFAQKSSNEKVCEKLEETELTLLGILGLKDPCRPGVEAAVESCKNAGVKIKMITGDNVHTAKAIASECGILNPSEELDEDAVVEGFQFRNYSHEERMDKIERIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYINIQRFIQFQLTVNIAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEEPTNDLMKMPPVGRVEPLITRAMWRNLISQASYQVFVLLILQFKGRSIFDVSEKVKNTLIFNIFVLCQVFNEFNARKVEKKNIFEGLGKNKLFIVIVGFTVVLQVVLVEFLKMFAGTERLSWGQWGVCVAIGALSWPIGLLVKCIPGRPSK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00161 995 CDD P-type_ATPase_Ca_PMCA-like 118 867 - -
Viun3g00161 995 SUPERFAMILY Calcium ATPase, transduction domain A 213 308 IPR008250 -
Viun3g00161 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Viun3g00161 995 FunFam Calcium-transporting ATPase 751 993 - -
Viun3g00161 995 Pfam haloacid dehalogenase-like hydrolase 432 748 - -
Viun3g00161 995 NCBIfam HAD-IC family P-type ATPase 379 459 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 NCBIfam HAD-IC family P-type ATPase 520 690 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 NCBIfam HAD-IC family P-type ATPase 705 816 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 Gene3D - 142 980 - -
Viun3g00161 995 Gene3D - 432 779 IPR023214 -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 649 659 - -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 627 638 - -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Viun3g00161 995 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Viun3g00161 995 FunFam Calcium-transporting ATPase 628 779 - -
Viun3g00161 995 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 639 IPR023299 GO:0000166
Viun3g00161 995 SFLD p-type atpase 417 787 IPR044492 -
Viun3g00161 995 Gene3D - 113 311 - -
Viun3g00161 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 991 IPR023298 -
Viun3g00161 995 PRINTS H+-transporting ATPase (proton pump) signature 588 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 PRINTS H+-transporting ATPase (proton pump) signature 766 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 PRINTS H+-transporting ATPase (proton pump) signature 734 750 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g00161 995 FunFam Calcium-transporting ATPase 188 311 - -
Viun3g00161 995 Pfam E1-E2 ATPase 213 414 - -
Viun3g00161 995 SFLD Haloacid Dehalogenase 417 787 - -
Viun3g00161 995 Gene3D - 445 634 IPR023299 GO:0000166
Viun3g00161 995 NCBIfam calcium-translocating P-type ATPase, PMCA-type 85 990 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun3g00161 995 FunFam Calcium-transporting ATPase 445 634 - -
Viun3g00161 995 PANTHER CATION TRANSPORTING ATPASE 71 990 - -
Viun3g00161 995 Pfam Cation transporting ATPase, C-terminus 819 988 IPR006068 -
Viun3g00161 995 SMART Cation_ATPase_N_a_2 92 164 IPR004014 -
Viun3g00161 995 Pfam Cation transporter/ATPase, N-terminus 92 159 IPR004014 -
Viun3g00161 995 SUPERFAMILY HAD-like 433 839 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00161 Viun-Chr3 858510 861758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00161 14 990 Primary Pumps ATPases AT3G22910 64.760 0.0 1204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00161 K01537 - gmx:100784119 1551.18