Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00146 ATGGCCCAAATTTCTTCTCTTCACTTCTCTGAATTCCCATCAATTCTTAATGTTCTTGTCATTGACAGTGATCTCAAACTTCTTGAATTCATCAAGAAAACATGCAACCAGTATTCTTATAAAGTTATGACATTTTCTGAATCTCTAAGTGCTGTCAATCTTTTGCGGGAAAGAAAAACGCATATTCATTTGATACTCATTGAAGTCCACATGCCAATTATGGATGGCTATGAATTCCTGCAATTCGTCAAGAAAGAAAGAATTAATGTTCCTGTCATCATGATGTCTGAAGATGATAGTAAAGCTTCCGCAATGAAGGCTATTGAACTTGGAGCTTGCGATTATCGGAATAAACCCTTGTGTGAGGACATGTTAAAGAATATGTGGATACGTGTTTTTATCCAGTTCCTGAGGGAACATAGGACCCAGAACAATATTGAGAGCTTGGGTGATGATAATAAAACAGAAGGGACAAGTGTTAAATCTGAATTTGATTCATCCATTGTTGGTAGGAGAAATAGTACTTTCAGAGAAAGTGATGATGTTGATGAATCAAAAAATTCTGTGAATCGCGTAGTATGGTCACAAGAACTGCATACTATATTTCTCGATGCTATTAGAAGAATTGGACTCGAAAATGCCGTGCCAAAGAAGATTCTCGAAGCTATGAACATGCCTGATTTGACAAGAGGACATGTTGCTAGTCATCTACAGAAATACAGAAAATTTTTGAAACAGGAACAGCAACGAAAACTTCATGAAGAGAATGAGATGTATTTGGTTTCAGGTAATAAAAAACCAAGGTTGTATGCATCTGGGGAAAACAACTTGCAACCGACACATCCTGGTCTCACATGTAACATCATGGAACCACCAAGAGAGAAATTATGTGATCCAAATGTACAAGTTGCTGAACATTATCATGCAGAACAACAAACTTTGGCACATGATTCTCCTTATCCTTTGCCAGCGTTTCCTAATATTTCCATTACTAACAATTTTCCTGAGTCTTCTAGATATGAATTATGTTCCGTACCTGATGCGGCTACGATTCAGATGAATAATATGCAGCATCCTCAAATTCATCGAATCGACTTGCCGTCATCCTTCATAACTATTTCTGAAAATTCAGCTTCTTGTCCTCAGAATTACAACTTTTGCATGAACATGCCACCTCAACCAGTAGTACCAGGTGAAAACAACATAGGTCAAGTGGCTCGGTATGAGTACAACAATGGAGCTTCTATGCATTACCCACCACAGCTTCCTCAAAACGCAGGTTTCCCAAATGGTGTTGTGAGATATTTTGCTGCCTCTACAGATATTAATGATCAAACAATCAAGAAGGAGTTAAATTCTATGAACAATGGTCATCACAATCCCTGA 1386 0.3773 MAQISSLHFSEFPSILNVLVIDSDLKLLEFIKKTCNQYSYKVMTFSESLSAVNLLRERKTHIHLILIEVHMPIMDGYEFLQFVKKERINVPVIMMSEDDSKASAMKAIELGACDYRNKPLCEDMLKNMWIRVFIQFLREHRTQNNIESLGDDNKTEGTSVKSEFDSSIVGRRNSTFRESDDVDESKNSVNRVVWSQELHTIFLDAIRRIGLENAVPKKILEAMNMPDLTRGHVASHLQKYRKFLKQEQQRKLHEENEMYLVSGNKKPRLYASGENNLQPTHPGLTCNIMEPPREKLCDPNVQVAEHYHAEQQTLAHDSPYPLPAFPNISITNNFPESSRYELCSVPDAATIQMNNMQHPQIHRIDLPSSFITISENSASCPQNYNFCMNMPPQPVVPGENNIGQVARYEYNNGASMHYPPQLPQNAGFPNGVVRYFAASTDINDQTIKKELNSMNNGHHNP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00146 461 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
Viun3g00146 461 CDD REC_typeB_ARR-like 18 133 - -
Viun3g00146 461 Gene3D - 186 246 - -
Viun3g00146 461 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
Viun3g00146 461 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 242 IPR006447 GO:0003677
Viun3g00146 461 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Viun3g00146 461 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 311 IPR045279 GO:0009736
Viun3g00146 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 245 IPR017930 -
Viun3g00146 461 Pfam Myb-like DNA-binding domain 191 241 IPR001005 -
Viun3g00146 461 FunFam Two-component response regulator 184 248 - -
Viun3g00146 461 Gene3D - 14 152 - -
Viun3g00146 461 SUPERFAMILY CheY-like 16 133 IPR011006 -
Viun3g00146 461 SMART REC_2 16 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00146 Viun-Chr3 749362 751138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00146 9 246 Response Regulator Gene Family AT2G25180 37.247 1.31e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun3g00146 Response_reg 3.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00146 - - vun:114178133 942.569