Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00124 ATGAGGAAGCATGAACTGGGTTTTGGAGGTCCCTTATTTTATGATCTTCTTTTCATTCTCTGTTTCCTTGTTATCTCGATCAAGTGTCAAGATGCAGCGGTGATGGGAGTTTTAAAGAGCACGATCAATGCCCCTGATAGCTTAGAATGGATAGGTGAAGATGTATGCAAATGGAGACATGTTGTGTGTGATTCATCAAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCGAGGGACTCTCCCCAAAGAGCTTGTGATGTTAACAGCGTTGACACGTTTTGAGTGTCAAGACAATAATCTTACAGGGGCATTCCCTTACCTCGCAAAATCATTGCAGAGGTTGATAATCCATGACAACAACTTTAACTTATTTCCTACTGATTTCTTCAAAGGCATGAGCAGTTTGCAAGAGGTGAGAATTGACAACGTCCCGTTCTCTCAATGGAACATTCCTAACAGTCTCAAAGATTGTGTCGCACTACAAACTTTCAGTGCTCAAAGCACTGGCCTTGCTGGGACAATCCCAAACTTTTTCGGCAAAGATGGTCCTTTTGCAGGTTTGGTTCTCTTAGCTTTGTCTGATAATTTTTTAGAAGGTGGGTTGCCTGCAAGCTTTGCAGGTAGTTCAATAGAAAATCTTCTGGTGAATGGACAAAACAGCAACTCTAAACTCAATGGCACCCTTGCGGTGTTAAGCAAAATGGTATCTTTGAAGCAAATATGGGCTAATGGGAATTCCTTCACTGGCCCTATACCAGATTTGGCACACCATGATCAACTTTATGATGTGAACTTGAGGGATAACCAATTGACTGGTGTTGTTCCACCCTCTTTAGTTGCTTTACCAAGTTTGAAGTCTGTGAGCTTAACAAACAACCTTCTTCAAGGATCCCCTCCTATGTTCAAGAATGGTGTGGGAGTGGACAACAACATGGATAGAGGGAGAAACCAATACTGCACAAATGTGGTGGGGCAATCATGCAGTCCCCTTGTAAATGTTTTATTATCTATTGTTCAACCTTTTGGGTATCCTTTAAATTTTGCTCAAAGTTGGCAGGGTAATGATCCATGTGCAAATAGATGGACAGGTATAATTTGTTCTGGAGGAAATATTTCGGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATTTGTCCATGTTTTGCTGGTATTACTTCGCTGACAAAGTTATTTCTTGCTAACAATAATCTCACGGGTACTATACCAGAAGAACTTGCTACTTTGCCTCATTTAGAAGAGTTAGATGTTTCCAACAATCATATATACGGCAAAGTGCCATCATTTCGTGAAGGTGTGGAACTTAAATATGAAGGCAATCCTGACATTGGAAAGAATGAACAAACTATTCCAAGTAATGTAGGTAAGGCAAACAAGAATAATACTCCAATGATTATTGGAATTACGATACTGGTTGTTATTATACTTGTTGTCGGGGTTTTGATACTTGTTAAGTTTAGGAGAAAGGAAAAGTACAAGGGTAAGCTTCAAAACCAAACCACGTTTGTGGTACCTCCTCGTTATGGGGATGGAAATGTTGTAAAGATAAACAGTGGAGGTCACGTAGAAGGAAATATTAGTTTATCATTAAGTTCTGCACAGAGTGTTTATCAAGGAGAAGCTAGTAACATGTTAATTCCAATTCAGATTTTGAAAGAAGCAACTAACAACTTTAGTGAAGGAAACATTTTGGGAAAAGGGGGTTTTGGCACTGTATACAAAGGGGAATTGCACGATGGGACAAAAATTGCAGTGAAAAGGATGCAATCAACAGGATTTGTAGATCAAAAAGGGTCGAGTGAGTTCACGTCTGAAATTGCCGTGCTCACCAGGGTTCGACACAGAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAGTGAGAGACTTCTTGTGTATGAATGCATGCCTCAAGGTGCTCTTAGTAGACACTTGATCAATTGGAAAGAAGAGGGGCTAAAACCACTTGAATGGAAGATAAGACTCAATATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTCCATGGTTTAGCACAACAAATTTTCATTCACAGAGATCTTAAACCATCCAACATTTTGCTTGGAAATGATATGCGAGCTAAAGTATCAGACTTTGGACTGGTTCGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGATTAGCAGGAACTTTTGGGTACATGGCACCAGAATATGCAGCTACTGGGAGACTTACCACAAAGGTTGATGTGTATAGTTTTGGAGTTATTCTTATGGAGATGATAACAGGAAGAAAGGCACTTGATGATAGTCAACCAGAAGAGAACATCCACCTCGTTACGTGGTTTCGCAAGATGTTAATAAACAAAGATTCATTCATAACAACCATTGACCCAACAATTAAGGTTGATGAGGAAACATTATGGAGTATTAGCACTGTTGCAGGGTTAGCAGGACACTGTTGTGCAAGGGAGCCTCACCAACGCCCTGACATGAGTCATGTGGTGAATGTGTTGTCTCCTCTTGTTCAAGTGTGGAAGCCTTCAGAAACAAACGTTAATGAAGCAGATGAAATTGATTTTGATATGACATTACCAGAAGCACTCGAAAGATGGAAACAGTTTGAGGGAAATAGCCACATCATTGATGTAACTTCTTCATCAGAATATCTTAATGCAAACAACACAAAATCAAATCCATAA 2721 0.3991 MRKHELGFGGPLFYDLLFILCFLVISIKCQDAAVMGVLKSTINAPDSLEWIGEDVCKWRHVVCDSSKRVKAIQIGNQNLRGTLPKELVMLTALTRFECQDNNLTGAFPYLAKSLQRLIIHDNNFNLFPTDFFKGMSSLQEVRIDNVPFSQWNIPNSLKDCVALQTFSAQSTGLAGTIPNFFGKDGPFAGLVLLALSDNFLEGGLPASFAGSSIENLLVNGQNSNSKLNGTLAVLSKMVSLKQIWANGNSFTGPIPDLAHHDQLYDVNLRDNQLTGVVPPSLVALPSLKSVSLTNNLLQGSPPMFKNGVGVDNNMDRGRNQYCTNVVGQSCSPLVNVLLSIVQPFGYPLNFAQSWQGNDPCANRWTGIICSGGNISVINFQNMGLSGTICPCFAGITSLTKLFLANNNLTGTIPEELATLPHLEELDVSNNHIYGKVPSFREGVELKYEGNPDIGKNEQTIPSNVGKANKNNTPMIIGITILVVIILVVGVLILVKFRRKEKYKGKLQNQTTFVVPPRYGDGNVVKINSGGHVEGNISLSLSSAQSVYQGEASNMLIPIQILKEATNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMQSTGFVDQKGSSEFTSEIAVLTRVRHRNLVALLGFCLDGSERLLVYECMPQGALSRHLINWKEEGLKPLEWKIRLNIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGNDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDSQPEENIHLVTWFRKMLINKDSFITTIDPTIKVDEETLWSISTVAGLAGHCCAREPHQRPDMSHVVNVLSPLVQVWKPSETNVNEADEIDFDMTLPEALERWKQFEGNSHIIDVTSSSEYLNANNTKSNP 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00124 906 Pfam Protein kinase domain 569 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00124 906 SUPERFAMILY L domain-like 334 439 - -
Viun3g00124 906 CDD STKc_IRAK 574 848 - -
Viun3g00124 906 SUPERFAMILY Protein kinase-like (PK-like) 547 854 IPR011009 -
Viun3g00124 906 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Viun3g00124 906 ProSiteProfiles Protein kinase domain profile. 568 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00124 906 SMART serkin_6 568 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00124 906 FunFam receptor-like protein kinase FERONIA 534 646 - -
Viun3g00124 906 FunFam Receptor-like kinase TMK4 29 327 - -
Viun3g00124 906 Pfam Leucine Rich repeats (2 copies) 396 432 IPR025875 -
Viun3g00124 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Viun3g00124 906 PANTHER OSJNBA0070M12.3 PROTEIN 16 891 - -
Viun3g00124 906 Gene3D Phosphorylase Kinase; domain 1 533 645 - -
Viun3g00124 906 Gene3D Transferase(Phosphotransferase) domain 1 647 870 - -
Viun3g00124 906 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Viun3g00124 906 SUPERFAMILY L domain-like 32 305 - -
Viun3g00124 906 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
Viun3g00124 906 Pfam Leucine rich repeat N-terminal domain 31 64 IPR013210 -
Viun3g00124 906 FunFam receptor protein kinase TMK1 647 864 - -
Viun3g00124 906 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Viun3g00124 906 Gene3D Ribonuclease Inhibitor 29 329 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00124 Viun-Chr3 591997 595019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00124 71 845 Receptor kinase-like Gene Family AT5G07280 31.273 1.19e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Viun3g00124 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00124 - K00924 gmx:100788903 1351.65