Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00121 ATGCAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTTCAAAGCCAACAATGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGACATCACAAACTTTACTGATCCCTTAATCATGTATGGCAAGCAAGATGAAGAAGGTGACATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACGAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCAGAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTCGGTCTGCTTCTAGGCACAGAATTGAGTTCCACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAAGTGCTTGACCGAGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCATGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCTGTTAAATTCACTGAGCGAGGACATATATTGGTGAAAGTCCATCTAGCAGAAAATAGGATTTCCACAATGAATGGGAAAGTGGAGACTTATCTCAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTTTAAGTGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTCAAGCATCTGATCGCCGATGAAGAATTTTTCTTCGATGATTCAGTTAAAAAGGTGGCCAGTGAATCCTATGAGCAAGTGACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCCCAAGATAAGATTTTCATGCCTTTTGTACAGGCAGATAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGGCCCCAGATTGGGAGCACGTTTTCATTCACTGCAGATTTTGGAACAATCAAGAAAAATTCAATCACTGACATGAAGAAACATAACTTGGAAGACCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTAGCAAATAGCATCAACAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAACTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATACTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACAGGGAAGAAGAGACAGCTAGGAAAGGACACGGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTAGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCTGCAGGTGCATTACAAAATTTTGGAGCTCATGTGACATGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGGTGAATGTGGTGAAGGAAATGGGTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACATGCGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTAACAAAGCCTTTTGAGGAAGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCAAAACCTACCTCAGACAACAACAACAACAACAACTCATTACAGAATGGCAACAGAACTTAA 2463 0.4129 MQEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPSKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDHGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRISTMNGKVETYLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQIGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNTEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHVTCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANGECGEGNGWKKEYHLPILAMTADVIQATCEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNNNNNNSLQNGNRT 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00121 820 Gene3D - 163 254 - -
Viun3g00121 820 Gene3D - 255 491 IPR036890 -
Viun3g00121 820 ProSiteProfiles CHASE domain profile. 1 130 IPR006189 -
Viun3g00121 820 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 245 483 IPR036890 -
Viun3g00121 820 PRINTS Bacterial sensor protein C-terminal signature 448 466 IPR004358 GO:0016310|GO:0016772
Viun3g00121 820 PRINTS Bacterial sensor protein C-terminal signature 413 427 IPR004358 GO:0016310|GO:0016772
Viun3g00121 820 PRINTS Bacterial sensor protein C-terminal signature 472 485 IPR004358 GO:0016310|GO:0016772
Viun3g00121 820 PRINTS Bacterial sensor protein C-terminal signature 431 441 IPR004358 GO:0016310|GO:0016772
Viun3g00121 820 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 179 257 IPR036097 GO:0000155|GO:0007165
Viun3g00121 820 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 796 - -
Viun3g00121 820 Gene3D - 662 805 - -
Viun3g00121 820 Gene3D - 506 647 - -
Viun3g00121 820 SMART HisKA_10 191 256 IPR003661 GO:0000155|GO:0007165
Viun3g00121 820 Pfam Response regulator receiver domain 669 795 IPR001789 GO:0000160
Viun3g00121 820 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 303 486 IPR003594 -
Viun3g00121 820 FunFam Histidine kinase 4 1 137 - -
Viun3g00121 820 SMART HKATPase_4 303 488 IPR003594 -
Viun3g00121 820 ProSiteProfiles Response regulatory domain profile. 668 799 IPR001789 GO:0000160
Viun3g00121 820 Pfam CHASE domain 3 101 IPR006189 -
Viun3g00121 820 ProSiteProfiles Response regulatory domain profile. 513 643 IPR001789 GO:0000160
Viun3g00121 820 ProSiteProfiles Histidine kinase domain profile. 198 488 IPR005467 -
Viun3g00121 820 Pfam His Kinase A (phospho-acceptor) domain 191 256 IPR003661 GO:0000155|GO:0007165
Viun3g00121 820 FunFam Histidine kinase 4 163 254 - -
Viun3g00121 820 SMART REC_2 667 795 IPR001789 GO:0000160
Viun3g00121 820 CDD HATPase_EvgS-ArcB-TorS-like 308 486 - -
Viun3g00121 820 Gene3D CHASE domain 1 137 IPR042240 -
Viun3g00121 820 SUPERFAMILY CheY-like 666 800 IPR011006 -
Viun3g00121 820 CDD REC_hyHK_CKI1_RcsC-like 669 795 - -
Viun3g00121 820 SUPERFAMILY CheY-like 509 644 IPR011006 -
Viun3g00121 820 CDD HisKA 191 252 IPR003661 GO:0000155|GO:0007165
Viun3g00121 820 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00121 Viun-Chr3 575110 579686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00121 2 808 Histidine Kinase Gene Family AT2G01830 68.627 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g00121 HATPase_c 2.2e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00121 K14489 - gmx:100818481 1398.65