Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00120 ATGAAGAGTGAGCAAGCAGGGAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGCTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTCGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCACGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCACTACTACAGAACACCTTCTGCAATTGATCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAAAGGCCATTGCTCAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCCGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTTTCTTACCTCGAATCTCTCGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTTCAAAGCCAACAATGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGACATCACAAACTTTACTGATCCCTTAATCATGTATGGCAAGCAAGATGAAGAAGGTGACATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACGAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCAGAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTCGGTCTGCTTCTAGGCACAGAATTGAGTTCCACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAAGTGCTTGACCGAGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCATGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCTGTTAAATTCACTGAGCGAGGACATATATTGGTGAAAGTCCATCTAGCAGAAAATAGGATTTCCACAATGAATGGGAAAGTGGAGACTTATCTCAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTTTAAGTGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTCAAGCATCTGATCGCCGATGAAGAATTTTTCTTCGATGATTCAGTTAAAAAGGTGGCCAGTGAATCCTATGAGCAAGTGACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCCCAAGATAAGATTTTCATGCCTTTTGTACAGGCAGATAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGGCCCCAGATTGGGAGCACGTTTTCATTCACTGCAGATTTTGGAACAATCAAGAAAAATTCAATCACTGACATGAAGAAACATAACTTGGAAGACCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTAGCAAATAGCATCAACAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAACTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATACTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACAGGGAAGAAGAGACAGCTAGGAAAGGACACGGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTAGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCTGCAGGTGCATTACAAAATTTTGGAGCTCATGTGACATGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGGTGAATGTGGTGAAGGAAATGGGTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACATGCGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTAACAAAGCCTTTTGAGGAAGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCAAAACCTACCTCAGACAACAACAACAACAACAACTCATTACAGAATGGCAACAGAACTTAA 2988 0.4193 MKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPSKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDHGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRISTMNGKVETYLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQIGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNTEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHVTCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANGECGEGNGWKKEYHLPILAMTADVIQATCEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNNNNNNSLQNGNRT 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00120 995 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Viun3g00120 995 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 658 IPR036890 -
Viun3g00120 995 CDD HATPase_EvgS-ArcB-TorS-like 483 661 - -
Viun3g00120 995 ProSiteProfiles Response regulatory domain profile. 688 818 IPR001789 GO:0000160
Viun3g00120 995 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 661 IPR003594 -
Viun3g00120 995 ProSiteProfiles Histidine kinase domain profile. 373 663 IPR005467 -
Viun3g00120 995 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 432 IPR036097 GO:0000155|GO:0007165
Viun3g00120 995 ProSiteProfiles Response regulatory domain profile. 843 974 IPR001789 GO:0000160
Viun3g00120 995 Gene3D CHASE domain 97 312 IPR042240 -
Viun3g00120 995 Gene3D - 430 666 IPR036890 -
Viun3g00120 995 Gene3D - 44 96 - -
Viun3g00120 995 Pfam His Kinase A (phospho-acceptor) domain 366 431 IPR003661 GO:0000155|GO:0007165
Viun3g00120 995 PANTHER TWO-COMPONENT HISTIDINE KINASE 16 971 - -
Viun3g00120 995 CDD REC_hyHK_CKI1_RcsC-like 844 970 - -
Viun3g00120 995 SMART CHASE_2 93 278 IPR006189 -
Viun3g00120 995 Pfam Response regulator receiver domain 844 970 IPR001789 GO:0000160
Viun3g00120 995 CDD HisKA 366 427 IPR003661 GO:0000155|GO:0007165
Viun3g00120 995 Coils Coil 416 436 - -
Viun3g00120 995 Gene3D - 837 980 - -
Viun3g00120 995 Gene3D - 681 822 - -
Viun3g00120 995 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Viun3g00120 995 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Viun3g00120 995 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Viun3g00120 995 PRINTS Bacterial sensor protein C-terminal signature 623 641 IPR004358 GO:0016310|GO:0016772
Viun3g00120 995 ProSiteProfiles CHASE domain profile. 93 305 IPR006189 -
Viun3g00120 995 FunFam Histidine kinase 4 338 429 - -
Viun3g00120 995 SUPERFAMILY CheY-like 841 975 IPR011006 -
Viun3g00120 995 Gene3D - 338 429 - -
Viun3g00120 995 Pfam CHASE domain 96 276 IPR006189 -
Viun3g00120 995 FunFam Histidine kinase 4 97 312 - -
Viun3g00120 995 SMART REC_2 842 970 IPR001789 GO:0000160
Viun3g00120 995 SUPERFAMILY CheY-like 684 819 IPR011006 -
Viun3g00120 995 SMART HKATPase_4 478 663 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00120 Viun-Chr3 573804 579686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00120 7 980 Histidine Kinase Gene Family AT2G01830 70.122 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g00120 HATPase_c 3e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00120 K14489 - gmx:100818481 1703.34