Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00115 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTGTGGTGTTACTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGTCACGTCTGCCACAAAAAGCTCTCAACCGCCAGCGGCATGGCCATCCACGTGCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAACCGGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCAGCACATTATGGCGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTCTGGGTACAGGATATCCTCCACGATCTGCCTTGCCTGCAATTCCACAAGTTTATAATCCAGCTGTACCCTTGCCACCAAATGCTTGGATGGTTCCACCTCGGCCGCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCAGCAGCCCTGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCAGTCCCAGTTTCGCAACCTTTGTTCCCTGTTGTTGGAAACAACCATACAACGACTCAAAGTTTGACATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCAGTAACAAGTAGTTACCAGGCTATAGGAGTTCCAGGCGCAGCAGCAAGTAATTCACACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACCTAGTTTGGGATGACGAGGCAATGTCCATGGAAGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGACGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAATTGTTTAGACATTGTTTCCTATTTAAAAAGGTACATTCTGAGTAA 1179 0.4775 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMRPPPLGTGYPPRSALPAIPQVYNPAVPLPPNAWMVPPRPQPWFSQPPAVSVPPPAPYTQQPLFPVQNVRPPLPATAPAALQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQSLTYSAPPLPSSVPSVTPVMSTNVPVDTHLSTHSSVTSSYQAIGVPGAAASNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFTSNQMSRLYASCFQIQLFRHCFLFKKVHSE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00115 392 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Viun3g00115 392 SMART c2h2final6 12 35 IPR013087 -
Viun3g00115 392 SMART c2h2final6 36 59 IPR013087 -
Viun3g00115 392 Gene3D Classic Zinc Finger 1 66 - -
Viun3g00115 392 PANTHER ZINC FINGER PROTEIN 207 1 355 - -
Viun3g00115 392 MobiDBLite consensus disorder prediction 286 305 - -
Viun3g00115 392 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Viun3g00115 392 CDD SUF4-like 13 92 - -
Viun3g00115 392 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00115 Viun-Chr3 545605 549325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00115 1 371 C2H2 Transcription Factor Family AT1G30970 61.658 9.18e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g00115 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00115 - - gsj:114413692 688.337