Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00114 ATGCCTGTTGTCACAAACAGAACAACAACACCACCTACAGTGGCAGAACACATCAAATGGAGAAGACCCAGAAGCCAATTCAACCATCAACACCACCACCCCATTCCAGAATCAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCAACTAGGGGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAACACTTCCTCCTCCAATAATGACACCCCCATCATCAATGCCACTGCTCAAAGCAAGAAAAAAAGCAACTTTTCCGCAGCAACCTTCAGAGGGTTGGGGTGCACCGCCGGCGCGTCACAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAGGGAAAGAAAACAAGAAAGAAGAAGCACAAGAGAACCACCGGCGGTGGCAAGAACAAGACTTTCCATGGCGGGGTTCTGGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGCATTGGGTTCTCAGCAGATACTGCTGCCTCTGTTGATTGTGTTGTGGCCCGGAAGAATGTATCTGCAAGAGGGAAAATTGATGTGGATAAGATTACTCATAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTTACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGACATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAAGCCAGACTTCAATTTTGGGATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGGTTTCACAGAAAAACTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACATTGA 1134 0.4647 MPVVTNRTTTPPTVAEHIKWRRPRSQFNHQHHHPIPESDPNPQIPSIIQSTRGKSTISSLLLSTFSNNTSSSNNDTPIINATAQSKKKSNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTTGGGKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHRERSSYVGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVSQKNFCPVCKQQVAARH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00114 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 22 373 IPR045191 GO:0061630
Viun3g00114 377 SMART ring_2 329 369 IPR001841 -
Viun3g00114 377 SUPERFAMILY RING/U-box 328 374 - -
Viun3g00114 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 375 IPR013083 -
Viun3g00114 377 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Viun3g00114 377 MobiDBLite consensus disorder prediction 118 145 - -
Viun3g00114 377 FunFam E3 ubiquitin-protein ligase rnf12-A 296 375 - -
Viun3g00114 377 MobiDBLite consensus disorder prediction 123 138 - -
Viun3g00114 377 Pfam Ring finger domain 327 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00114 Viun-Chr3 536845 540367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00114 14 284 C3H Transcription Factor Family AT1G73760 41.438 3.07e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00114 - - vum:124831997 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00334 4 2053557 2059772 Viun3g00114 3 536845 540367 ECH
Viun3g00114 3 536845 540367 Viun3g00114 3 536845 540367 ECH