Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00096 ATGGAACAAACAATGGCAGCCCCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCGGCTGATACAAAATCCTATCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACTGCTGAAACTTGCAGATTTTGGCTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTCTGGGCTTTAGCTTGTGTATTTGCTGAACTTCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATCGATCAATTAGGAAAGATTTTTTCGGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTACGTCGAATACCAATATGTTCCTGCACCCCCTCTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGATTTGTTATCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAAGGAACCTAAGGCTTCTGATTTCAATTTACAGGAGGCTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGAACGTGATGGGTTTGAAGGTAATTCCCAGCAAGCAGATAAGGTTGATGGCGGTTTTGGTGATTTCAGACAGACAACTGATGATAATTCAGTGCTGATAGAACACATTTAA 1143 0.4217 MEQTMAAPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGLLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWALACVFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKKEPKASDFNLQEAPTVLSPPRKSRRVMPERDGFEGNSQQADKVDGGFGDFRQTTDDNSVLIEHI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00096 380 SUPERFAMILY Protein kinase-like (PK-like) 14 305 IPR011009 -
Viun3g00096 380 SMART serkin_6 18 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00096 380 PANTHER CELL DIVISION PROTEIN KINASE 16 304 - -
Viun3g00096 380 Gene3D Transferase(Phosphotransferase) domain 1 99 314 - -
Viun3g00096 380 ProSiteProfiles Protein kinase domain profile. 18 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00096 380 MobiDBLite consensus disorder prediction 339 353 - -
Viun3g00096 380 Pfam Protein kinase domain 20 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00096 380 Gene3D Phosphorylase Kinase; domain 1 9 98 - -
Viun3g00096 380 CDD STKc_CDK7 17 311 IPR037770 GO:0005675|GO:0008353|GO:0070985
Viun3g00096 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Viun3g00096 380 FunFam Cyclin-dependent kinase D-1 9 98 - -
Viun3g00096 380 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Viun3g00096 380 FunFam Putative cyclin-dependent kinase 7 99 314 - -
Viun3g00096 380 MobiDBLite consensus disorder prediction 299 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00096 Viun-Chr3 449208 453707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00096 8 358 Core Cell Cycle Gene Families AT1G18040 78.632 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Viun3g00096 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00096 K02202 - gmx:100776618 701.434