LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00095	ATGGAACAAACAATGGCAGCCCCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCGGCTGATACAAAATCCTATCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACTGCTGAAACTTGCAGATTTTGGCTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTCTGGGCTTTAGCTTGTGTATTTGCTGAACTTCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATCGATCAATTAGGAAAGATTTTTTCGGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTACGTCGAATACCAATATGTTCCTGCACCCCCTCTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGATTTGTTATCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAAGGAACCTAAGGCTTCTGATTTCAATTTACAGGAGGCTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGAACGTGATGGGTTTGAAGGTAATTCCCAGCAAGCAGATAAGGTTGATGGCGGTTTTGGTGATTTCAGACAGACAACTGATGATAATTCAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGATAGAACACATTTAAAAAGAAAATTAGATCTAGAATTTCAACAGCCAGAATGA	1260	0.4127	MEQTMAAPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGLLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWALACVFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKKEPKASDFNLQEAPTVLSPPRKSRRVMPERDGFEGNSQQADKVDGGFGDFRQTTDDNSGKNESAPMSVDFSIFGLKPPNRPTINSADRTHLKRKLDLEFQQPE	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00095	419	Gene3D	Phosphorylase Kinase; domain 1	9	98	-	-
	Viun3g00095	419	Pfam	Protein kinase domain	20	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00095	419	FunFam	Cyclin-dependent kinase D-1	9	98	-	-
	Viun3g00095	419	SMART	serkin_6	18	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00095	419	MobiDBLite	consensus disorder prediction	367	381	-	-
	Viun3g00095	419	ProSiteProfiles	Protein kinase domain profile.	18	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g00095	419	MobiDBLite	consensus disorder prediction	299	419	-	-
	Viun3g00095	419	MobiDBLite	consensus disorder prediction	339	353	-	-
	Viun3g00095	419	Gene3D	Transferase(Phosphotransferase) domain 1	99	314	-	-
	Viun3g00095	419	PANTHER	CELL DIVISION PROTEIN KINASE	16	304	-	-
	Viun3g00095	419	FunFam	Putative cyclin-dependent kinase 7	99	314	-	-
	Viun3g00095	419	MobiDBLite	consensus disorder prediction	402	419	-	-
	Viun3g00095	419	SUPERFAMILY	Protein kinase-like (PK-like)	14	305	IPR011009	-
	Viun3g00095	419	CDD	STKc_CDK7	17	311	IPR037770	GO:0005675\|GO:0008353\|GO:0070985
	Viun3g00095	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	136	148	IPR008271	GO:0004672\|GO:0006468
	Viun3g00095	419	ProSitePatterns	Protein kinases ATP-binding region signature.	24	48	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g00095	Viun-Chr3	449207	453707	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g00095	8	416	Core Cell Cycle Gene Families	AT1G18040	74.572	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CDK7	Viun3g00095		Pkinase	2.9e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g00095	K02202		-	gmx:100776618	786.949