Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00091 ATGGATATTGAGGAGGACATCCGTTCTTTACAGCTTGAATCAGCAGAAGACAACAACGGGGTGGTAAATCCAGAGGATGGAAGGCCGGAAGCAGTTGAGAAATCTGATAAGATGGATGAAGATCCTAAGCAAGAAGTTGAAGAACAGGCTCAACAGCCTGAGCCTGAGCCAATAGTGAAAGATAAGGAGATTCCTCCCGTTCAAGAAGAAGAAGAGGAGCCAGAGGCAACTAAAAGGCACTTGAATGTAGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATTCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGGAAAACAGTTGAAGTTGGAAGAGCACATTTTGAAACTGAGACAACAAGGTTTACTATTTTGGATGCACCTGGCCACAAAAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGATATTGGTGTTTTGGTTATATCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAGCATGTCCAGCTTGCAAAAACGCTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGAACCTACAGTGCAGTGGTCAAAAGAAAGGTATGAGGAAATCGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAATGTAAAGAAAGATGTCTTGTTTTTGCCAATATCTGGTCTAGTGGGTGCAAACATGAAAACAAGGGTGGACAAAAGTGTTTGCCCATGGTGGAATGGGCCTTGCTTGTTCGAGGCCCTTGATGCTATTGAAGTTCCACCACGAGATCCCAAAGGTCCTTTCAGGATGCCCATTATTGACAAATTTAAGGACATGGGAACTGTTATTATGGGCAAAGTTGAATCTGGTTCTGTTCGTGAGGGAGACTCTTTGCTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCCATATACATTGACGAGGACCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTAGCTGGTGTTGAAGAAGAAGACATAGTAACTGGGTTTGTTCTGTCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTTTTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGCGCTGTTGTAGTGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAATTTCTCTGATTTCCCACAACTTGGGAGGTTCACTCTCCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTGACTGGTCTGTGA 1515 0.4257 MDIEEDIRSLQLESAEDNNGVVNPEDGRPEAVEKSDKMDEDPKQEVEEQAQQPEPEPIVKDKEIPPVQEEEEEPEATKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYEEIESKMVPFLKQSGYNVKKDVLFLPISGLVGANMKTRVDKSVCPWWNGPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVIMGKVESGSVREGDSLLVMPNKDQVKVVAIYIDEDRVKRAGPGENLRIRLAGVEEEDIVTGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVNNSICIENFSDFPQLGRFTLRTEGKTVAVGKVTGL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00091 504 PANTHER TRANSLATION FACTOR 71 502 - -
Viun3g00091 504 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 503 IPR009001 -
Viun3g00091 504 MobiDBLite consensus disorder prediction 1 79 - -
Viun3g00091 504 Pfam Elongation factor Tu GTP binding domain 78 284 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 FunFam Putative translation elongation/initiation factor family protein 396 504 - -
Viun3g00091 504 MobiDBLite consensus disorder prediction 27 79 - -
Viun3g00091 504 Gene3D Translation factors 397 504 - -
Viun3g00091 504 PRINTS GTP-binding elongation factor signature 221 230 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 313 IPR027417 -
Viun3g00091 504 Gene3D - 60 302 IPR027417 -
Viun3g00091 504 CDD eRF3_II 309 390 - -
Viun3g00091 504 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Viun3g00091 504 CDD EF1_alpha 82 303 - -
Viun3g00091 504 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 59 302 - -
Viun3g00091 504 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 304 IPR000795 GO:0003924|GO:0005525
Viun3g00091 504 SUPERFAMILY Translation proteins 301 394 IPR009000 -
Viun3g00091 504 CDD eRF3_C_III 396 504 - -
Viun3g00091 504 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 306 392 - -
Viun3g00091 504 Gene3D Translation factors 307 392 - -
Viun3g00091 504 Pfam Elongation factor Tu domain 2 322 388 IPR004161 GO:0005525
Viun3g00091 504 Pfam Elongation factor Tu C-terminal domain 395 503 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00091 Viun-Chr3 429743 440171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00091 78 499 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 1.37e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00091 K03267 - gmx:100784412 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00091 3 429743 440171 Viun3g00091 3 429743 440171 ECH