Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00078 ATGGGTGGTGGAGGAACGCTCGTGGAAGGGCTTCGACGATTGTTTCAACGACGCGCTTCTAGCTCTGCTGAAAACCACAACAATGCCAACAATAGCCGCGTCCACGTGAGAGATTTACGCGCGCAGTTGTCTTCCATTCCCAACCACGACCACCTCGTTGACCCTAATTTCGATTTCTCCACCTTGAAGCCCATCAAAGTTCCCGCACAAATCCCCTTCAGACCGTCTTCTATGGATCATCACAAAAAGGGTGCTCCAGAGTCTGAGTTCTTTACTGAGTATGGAGAGGCAAGTCAATACCAGATCCAAGAGGTTGTTGGAAAAGGAAGTTATGGCGTTGTGGGTTCTGCCGTTGACACTCACACAGGTGAAAGGGTTGCAATCAAGAAAATTAATGATGTTTTTGAGCATGTATCCGATGCCACACGGATCCTTAGAGAAATTAAGCTCTTGCGGTTGCTCAGACATCCCGATATTGTGGAAATTAAGCATATTATGCTTCCTCCTTCCCGGAGAGAGTTCAGGGATATCTATGTAGTGTTTGAGTTGATGGAATCTGATCTTCATCAAGTAATCAAGGCCAATGATGATCTTACACCTGAGCACCACCAATTTTTCTTGTACCAACTTCTAAGGGGCATGAAATATATTCATACAGCAAACGTGTTTCATCGTGATCTGAAGCCAAAAAATATTCTTGCTAACGCTGACTGCAAACTAAAAATATGCGATTTTGGGCTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGATTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAATACACCCCTGCAATTGATATATGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGAAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACTCCTCCTCCCGAGTCCATTGCAAGGATTCGAAATGAAAAGGCCAAAAGGTATCTCAACAGCATGAGAAAAAAGCAACCAGTTCCACTATCCCAAAAATTTCCAAATGCAGATCCATTGGCTCTCCGGTTACTGGAGCGGCTACTCGCATTTGACCCTAAAGACCGACCATCAGCTGAAGAGGCATTAGCTGATCCTTACTTCATTGGTTTGGCGAACATAGAGCGTGAACCATGCACTCTACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTCAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCTCAAATGCTCCAAGAACATCTTCGTGGAGATCAAACTAGCTTCATGTATCCAAGTGGGGTTGATAGGTTCAAGAGACAGTTTGCACATCTTGAGGAGCATTATGGGAACGGTGAACGAAGCACTCCATTGCAGAGACAACATGCCTCCTTACCTAGAGAGAGAGTTTGTGCTCCCAAGGATGAAAGTAAACAACAGAACGATATTGAAAGTGTTCCAGGGTCTGATGCGACAGCAAGAGGCAATTAA 1554 0.4395 MGGGGTLVEGLRRLFQRRASSSAENHNNANNSRVHVRDLRAQLSSIPNHDHLVDPNFDFSTLKPIKVPAQIPFRPSSMDHHKKGAPESEFFTEYGEASQYQIQEVVGKGSYGVVGSAVDTHTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGMKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKAKRYLNSMRKKQPVPLSQKFPNADPLALRLLERLLAFDPKDRPSAEEALADPYFIGLANIEREPCTLPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEHLRGDQTSFMYPSGVDRFKRQFAHLEEHYGNGERSTPLQRQHASLPRERVCAPKDESKQQNDIESVPGSDATARGN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00078 517 MobiDBLite consensus disorder prediction 488 502 - -
Viun3g00078 517 Gene3D Phosphorylase Kinase; domain 1 116 437 - -
Viun3g00078 517 CDD STKc_TDY_MAPK 99 436 - -
Viun3g00078 517 FunFam Mitogen-activated protein kinase 89 194 - -
Viun3g00078 517 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 99 441 - -
Viun3g00078 517 SUPERFAMILY Protein kinase-like (PK-like) 96 395 IPR011009 -
Viun3g00078 517 ProSitePatterns MAP kinase signature. 135 238 IPR003527 GO:0004707|GO:0005524|GO:0006468
Viun3g00078 517 ProSiteProfiles Protein kinase domain profile. 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00078 517 Gene3D Transferase(Phosphotransferase) domain 1 186 414 - -
Viun3g00078 517 ProSitePatterns Protein kinases ATP-binding region signature. 106 130 IPR017441 GO:0005524
Viun3g00078 517 MobiDBLite consensus disorder prediction 470 517 - -
Viun3g00078 517 Pfam Protein kinase domain 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00078 517 SMART serkin_6 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g00078 517 FunFam Mitogen-activated protein kinase 186 414 - -
Viun3g00078 517 FunFam Mitogen-activated protein kinase 415 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00078 Viun-Chr3 354653 359301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00078 1 505 MAP Kinase Gene Family AT1G73670 77.344 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Viun3g00078 Pkinase 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00078 - - gmx:100780831 912.524